# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/hg03945.fasta.nr -Q ../query/KIAA1661.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1661, 90 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7803939 sequences Expectation_n fit: rho(ln(x))= 6.3062+/-0.000207; mu= -4.3703+/- 0.012 mean_var=122.3287+/-23.227, 0's: 355 Z-trim: 427 B-trim: 102 in 2/66 Lambda= 0.115960 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|114647891|ref|XP_001151322.1| PREDICTED: hypoth ( 215) 398 76.7 1.2e-12 gi|109099252|ref|XP_001108906.1| PREDICTED: hypoth ( 102) 365 70.9 3.2e-11 gi|115619092|ref|XP_001178313.1| PREDICTED: hypoth ( 201) 367 71.5 4.2e-11 gi|118120796|ref|XP_001235852.1| PREDICTED: hypoth ( 157) 350 68.6 2.5e-10 gi|158601986|gb|EDP38713.1| hypothetical protein B ( 146) 345 67.7 4.3e-10 gi|109483482|ref|XP_001075184.1| PREDICTED: hypoth ( 167) 344 67.6 5.3e-10 gi|109484701|ref|XP_001071833.1| PREDICTED: hypoth ( 169) 344 67.6 5.3e-10 gi|169204472|ref|XP_001716604.1| PREDICTED: hypoth ( 92) 338 66.4 6.9e-10 gi|77747867|ref|NP_637428.2| adsorption protein [X ( 363) 337 66.7 2.1e-09 gi|21113191|gb|AAM41352.1| adsorption protein [Xan ( 386) 337 66.7 2.2e-09 gi|77761192|ref|YP_243188.2| adsorption protein [X ( 361) 335 66.4 2.6e-09 gi|66573758|gb|AAY49168.1| adsorption protein [Xan ( 384) 335 66.4 2.8e-09 gi|23505145|emb|CAD51927.1| hypothetical protein [ (1249) 335 66.9 6.6e-09 gi|171740879|gb|ACB54934.1| insect intestinal muci ( 547) 329 65.5 7.2e-09 gi|115716035|ref|XP_001199483.1| PREDICTED: hypoth ( 481) 324 64.7 1.2e-08 gi|193893164|gb|EDV92030.1| GH24270 [Drosophila gr ( 229) 316 63.0 1.7e-08 gi|37991666|dbj|BAD00044.1| shell matrix protein [ ( 413) 319 63.8 1.9e-08 gi|603155|gb|AAB87092.1| adsorption protein [Xanth ( 367) 317 63.4 2.2e-08 gi|158596434|gb|EDP34775.1| acidic repetitive prot ( 282) 314 62.8 2.5e-08 gi|109469664|ref|XP_001078942.1| PREDICTED: hypoth ( 132) 309 61.6 2.6e-08 gi|4019300|gb|AAC95598.1| orf 73 [Ateline herpesvi ( 447) 314 63.0 3.5e-08 gi|210115140|gb|EEA62894.1| hypothetical protein B ( 280) 309 61.9 4.5e-08 gi|115641614|ref|XP_001203990.1| PREDICTED: hypoth ( 257) 308 61.7 4.7e-08 gi|126342266|ref|XP_001370558.1| PREDICTED: simila (1328) 318 64.0 4.9e-08 gi|108996056|ref|XP_001104699.1| PREDICTED: hypoth ( 236) 307 61.5 5e-08 gi|126336764|ref|XP_001372274.1| PREDICTED: hypoth ( 165) 303 60.7 6.1e-08 gi|114692037|ref|XP_001147114.1| PREDICTED: hypoth ( 116) 300 60.1 6.7e-08 gi|159173130|gb|EDP57960.1| glycoside hydrolase, f ( 737) 311 62.6 7.2e-08 gi|210121740|gb|EEA69451.1| hypothetical protein B ( 299) 305 61.3 7.5e-08 gi|150854339|gb|EDN29531.1| predicted protein [Bot ( 428) 307 61.8 7.7e-08 gi|83632721|gb|ABC28688.1| uncharacterized conserv ( 671) 308 62.1 9.5e-08 gi|115725092|ref|XP_781041.2| PREDICTED: hypotheti ( 971) 310 62.6 9.9e-08 gi|166208653|gb|ABY84933.1| aspein [Pinctada fucat ( 237) 301 60.5 1e-07 gi|109513534|ref|XP_001075308.1| PREDICTED: hypoth ( 296) 302 60.8 1e-07 gi|77761193|ref|YP_243195.2| adsorption protein [X ( 349) 302 60.8 1.2e-07 gi|66573765|gb|AAY49175.1| adsorption protein [Xan ( 356) 302 60.9 1.2e-07 gi|126344346|ref|XP_001381784.1| PREDICTED: hypoth ( 327) 300 60.5 1.4e-07 gi|218167464|gb|ACK66201.1| hypothetical protein P ( 299) 297 60.0 1.9e-07 gi|83637337|gb|ABC33304.1| predicted metalloprotea ( 346) 297 60.0 2.1e-07 gi|60465532|gb|EAL63616.1| hypothetical protein DD ( 782) 302 61.2 2.1e-07 gi|23498950|emb|CAD51028.1| hypothetical protein [ (2162) 306 62.2 2.8e-07 gi|150409788|gb|EDN05228.1| predicted protein [Aje ( 220) 291 58.8 3e-07 gi|78036452|emb|CAJ24143.1| filamentous phage phiL ( 328) 291 59.0 4.1e-07 gi|126305103|ref|XP_001369164.1| PREDICTED: hypoth ( 166) 285 57.7 4.9e-07 gi|158591185|gb|EDP29798.1| aspartic acid-rich pro ( 121) 283 57.3 4.9e-07 gi|109461697|ref|XP_001079411.1| PREDICTED: hypoth ( 200) 286 58.0 5e-07 gi|88779640|gb|EAR10826.1| cellulose-binding domai (1096) 296 60.3 5.5e-07 gi|115363886|gb|EAU62997.1| BatC, putative [Stigma ( 269) 286 58.1 6.3e-07 gi|109069019|ref|XP_001111574.1| PREDICTED: hypoth ( 874) 291 59.4 8.3e-07 gi|115908444|ref|XP_001201691.1| PREDICTED: hypoth ( 123) 278 56.4 8.9e-07 >>gi|114647891|ref|XP_001151322.1| PREDICTED: hypothetic (215 aa) initn: 570 init1: 355 opt: 398 Z-score: 383.2 bits: 76.7 E(): 1.2e-12 Smith-Waterman score: 398; 64.894% identity (68.085% similar) in 94 aa overlap (1-90:59-149) 10 20 30 KIAA16 GDDGGGCDDGDDDGDDDGGGGDGGGDGDDG :::: : :::::: : : : :: : :::: gi|114 QAAGREGVMMAPRCAALDLPPWTWDDGDGDGDDGDG-DDGDDDDDGDDGDGDDGDDGDDD 30 40 50 60 70 80 40 50 60 70 80 KIAA16 GDGGDDD---GDHDDGDGGYGGDDGDDDGDGGGDGDDDDSDDGGDDANDDGG-GCHALLT ::: ::: :: ::::: ::::: ::::: ::: ::::: :::.. :: : : gi|114 GDGDDDDDGDGDGDDGDG--DGDDGDCDGDGGDDGDGDDSDDDGDDGDTDGDDGDDAYHD 90 100 110 120 130 140 90 KIAA16 SGKD .: : gi|114 DGDDGDGGAKAAVFDFGGFYCVCDSPGPAGTRPPDDYEVMEPPGLGSWALPAQLTPQAEL 150 160 170 180 190 200 >>gi|109099252|ref|XP_001108906.1| PREDICTED: hypothetic (102 aa) initn: 554 init1: 295 opt: 365 Z-score: 357.6 bits: 70.9 E(): 3.2e-11 Smith-Waterman score: 365; 67.500% identity (73.750% similar) in 80 aa overlap (3-79:3-79) 10 20 30 40 50 KIAA16 GDDGGGCDDGDDDGDDDGGGGDGGGDGDDGGDGGDDD---GDHDDGDGGYGGDDGDDDGD :: : .:::::.:: :: :: :.::: ::: ::: :: :: ::: ::: ::::: gi|109 MSDGDGDNDGDDDSDD-GGKGDEDGNGDDDGDGDDDDDGDGDDDDDDGG-DGDDDDDDGD 10 20 30 40 50 60 70 80 90 KIAA16 GGGDGDDDDSDDGGDDANDDGGGCHALLTSGKD ::: ::.:::::: .:::: gi|109 DDDDGDGDDDDDGGDD-DDDGGDGADGGDGDDDEPQLPAFCWWLH 60 70 80 90 100 >>gi|115619092|ref|XP_001178313.1| PREDICTED: hypothetic (201 aa) initn: 1490 init1: 356 opt: 367 Z-score: 355.5 bits: 71.5 E(): 4.2e-11 Smith-Waterman score: 397; 63.830% identity (68.085% similar) in 94 aa overlap (1-83:18-111) 10 20 30 40 KIAA16 GDDGGGCDDGDDDGDDDGGGGDGGGDGDDGGDGGDDDGDH--- :::: : : :: ::::: : ::: :::::: :::: gi|115 MPAPAVDDTDDDDDDDGGDDGDGGDGGDGGDDDDGGDGGDDGDGGDGGDGGGDDGDGGDG 10 20 30 40 50 60 50 60 70 80 90 KIAA16 -DDGDGGYGGDDGD--DDGDGGGDGD----DDDSDDGGDDAN-DDGGGCHALLTSGKD :::::: :::::: :: ::: :.: :::. :::: .. :::::: : gi|115 GDDGDGGDGGDDGDGGDDDDGGDDNDGGNDDDDGGDGGDGGDGDDGGGCGADGGNGVCDV 70 80 90 100 110 120 gi|115 GGCGADGGDAGCDGLNEAPTLEDRPGGLLGSVCSTCPSFISRTQSVCGSDGTSFSNLCEL 130 140 150 160 170 180 >>gi|118120796|ref|XP_001235852.1| PREDICTED: hypothetic (157 aa) initn: 1472 init1: 321 opt: 350 Z-score: 341.6 bits: 68.6 E(): 2.5e-10 Smith-Waterman score: 371; 66.667% identity (69.048% similar) in 84 aa overlap (1-80:69-151) 10 20 KIAA16 GDDGGGCDDGD-DDGDDDGGGGDGG--GDG :::: : ::: :::: : : :: : ::: gi|118 DGDDGEDGDGDGDGDDGDRDGDGDDGDDGDGDDGDGDGDGDRDDGDGDDGDGDDGDDGDG 40 50 60 70 80 90 30 40 50 60 70 80 KIAA16 DDGGDGGDDDGDHDDGDGGYGGDDGDDDGDGGGDGDD-DDSDDGGDDANDDGGGCHALLT ::: :: : ::: ::: : :::::: :: : :::: ::.::: : .::: : gi|118 DDGDDGDDGDGDDGDGDDGDDGDDGDD-GDDGDDGDDGDDGDDGDGDDGDDGDGDRDDGD 100 110 120 130 140 150 90 KIAA16 SGKD >>gi|158601986|gb|EDP38713.1| hypothetical protein Bm1_0 (146 aa) initn: 2774 init1: 290 opt: 345 Z-score: 337.5 bits: 67.7 E(): 4.3e-10 Smith-Waterman score: 345; 63.529% identity (67.059% similar) in 85 aa overlap (1-80:31-115) 10 20 KIAA16 GD-DGGGCDDGDDDGDDDGGG-GDGGGDGD :: :: : ::: ::: :: : ::: :::: gi|158 MDVKLTLEDFWIQRRTLAFDSDSDSDSDSDGDGDGDGDGDGDGDGDGDGDGDGDGDGDGD 10 20 30 40 50 60 30 40 50 60 70 80 KIAA16 DGGDG-GDDDGDHD-DGDGGYGGD-DGDDDGDGGGDGDDDDSDDGGDDANDDGGGCHALL ::: :: ::: : :::: :: ::: :::: :::: : . :: :.. :: : gi|158 GDGDGDGDGDGDGDGDGDGDGDGDGDGDGDGDGDGDGDGDGDGDGDGDGDGDGDGDGDGD 70 80 90 100 110 120 90 KIAA16 TSGKD gi|158 GDGDGDGDGDGDGDGDGDGDGDGDGD 130 140 >>gi|109483482|ref|XP_001075184.1| PREDICTED: hypothetic (167 aa) initn: 1813 init1: 291 opt: 344 Z-score: 335.8 bits: 67.6 E(): 5.3e-10 Smith-Waterman score: 344; 63.750% identity (67.500% similar) in 80 aa overlap (1-78:66-142) 10 20 30 KIAA16 GDDGGGCDDGDDDGDDDGGGGDGGGDGDDG :: :: :: ::::: : :: ::::: gi|109 KEEDDDEEKEEKEKAEEEEDEENEDADDKDGDGDGGDDDDGDDGDD--GDGDDDDDGDDG 40 50 60 70 80 90 40 50 60 70 80 KIAA16 GDGGDDDGDHDDGDGGYGGDDGDDDGDGGGDGDDDDSDDG--GDDANDDGGGCHALLTSG :: :::: : :: : :: ::::: : :::::.::: :::..::: gi|109 DDGDGDDGD-DGDDGDDGDDDDDDDGDDGDGGDDDDGDDGDDGDDGDDDGDEGWKKVQCE 100 110 120 130 140 150 90 KIAA16 KD gi|109 PQYSLRDEVLLVDFP 160 >>gi|109484701|ref|XP_001071833.1| PREDICTED: hypothetic (169 aa) initn: 1813 init1: 291 opt: 344 Z-score: 335.7 bits: 67.6 E(): 5.3e-10 Smith-Waterman score: 344; 63.750% identity (67.500% similar) in 80 aa overlap (1-78:68-144) 10 20 30 KIAA16 GDDGGGCDDGDDDGDDDGGGGDGGGDGDDG :: :: :: ::::: : :: ::::: gi|109 KEEDDDEEKEEKEKAEEEEDEENEDADDKDGDGDGGDDDDGDDGDD--GDGDDDDDGDDG 40 50 60 70 80 90 40 50 60 70 80 KIAA16 GDGGDDDGDHDDGDGGYGGDDGDDDGDGGGDGDDDDSDDG--GDDANDDGGGCHALLTSG :: :::: : :: : :: ::::: : :::::.::: :::..::: gi|109 DDGDGDDGD-DGDDGDDGDDDDDDDGDDGDGGDDDDGDDGDDGDDGDDDGDEGWKKVQCE 100 110 120 130 140 150 90 KIAA16 KD gi|109 PQYSLRDEVLLVDFP 160 >>gi|169204472|ref|XP_001716604.1| PREDICTED: hypothetic (92 aa) initn: 1023 init1: 279 opt: 338 Z-score: 333.8 bits: 66.4 E(): 6.9e-10 Smith-Waterman score: 338; 65.789% identity (69.737% similar) in 76 aa overlap (1-73:11-85) 10 20 30 40 KIAA16 GDDGGGCDD--GDDDGDDDGGGGDGGGDGDDGGDGGDDDGDHDDGDGGYG ::: : :: :.:::::: :: : : : : : : ::.::: :::: : : gi|169 MCPTQCDDDDGDDDDGDDDDGGEDDGDDDDGGEDDGDDDDAGDDDGDNDGDGDDGDDG-G 10 20 30 40 50 50 60 70 80 90 KIAA16 GDDGDDDGDGGGDGDDDDSDDG-GDDANDDGGGCHALLTSGKD ::::::::: ::: .::: ::: gi|169 DDDGDDDGDGEDGGDDGGDDDGDGDDDIRVSWW 60 70 80 90 >>gi|77747867|ref|NP_637428.2| adsorption protein [Xanth (363 aa) initn: 281 init1: 281 opt: 337 Z-score: 325.0 bits: 66.7 E(): 2.1e-09 Smith-Waterman score: 337; 58.889% identity (64.444% similar) in 90 aa overlap (2-90:178-261) 10 20 30 KIAA16 GDDGGGCDDGDDDGDDDGGGGDGGGDGDDGG :::: :::::: :::: :::::: :: gi|777 TYAVDAGGPKGYTYVPSGATCTTDDAAPPIDDGG---DGDDDGGGDGGG-DGGGDG--GG 150 160 170 180 190 200 40 50 60 70 80 90 KIAA16 DGGDDDGDHDDGDGGY-GGDDGDDDGDGGGDGDDDDSDDGGDDANDDGGGCHALLTSGKD ::: : : :::: :: :: ::::::::: : . :: :.. :: : . : . : gi|777 DGGGDGGGDGGGDGGGDGGGDGGGDGDGGGDGDGDGDGDGDGDGDGDGDGDGGTLPGDGD 210 220 230 240 250 260 gi|777 GEEGGEGAPMSELYKKSGKTVESVLSKFNTQVRGTPMVAGIGDFMKVPSGGSCPVFSLGA 270 280 290 300 310 320 >>gi|21113191|gb|AAM41352.1| adsorption protein [Xanthom (386 aa) initn: 281 init1: 281 opt: 337 Z-score: 324.7 bits: 66.7 E(): 2.2e-09 Smith-Waterman score: 337; 58.889% identity (64.444% similar) in 90 aa overlap (2-90:201-284) 10 20 30 KIAA16 GDDGGGCDDGDDDGDDDGGGGDGGGDGDDGG :::: :::::: :::: :::::: :: gi|211 TYAVDAGGPKGYTYVPSGATCTTDDAAPPIDDGG---DGDDDGGGDGGG-DGGGDG--GG 180 190 200 210 220 40 50 60 70 80 90 KIAA16 DGGDDDGDHDDGDGGY-GGDDGDDDGDGGGDGDDDDSDDGGDDANDDGGGCHALLTSGKD ::: : : :::: :: :: ::::::::: : . :: :.. :: : . : . : gi|211 DGGGDGGGDGGGDGGGDGGGDGGGDGDGGGDGDGDGDGDGDGDGDGDGDGDGGTLPGDGD 230 240 250 260 270 280 gi|211 GEEGGEGAPMSELYKKSGKTVESVLSKFNTQVRGTPMVAGIGDFMKVPSGGSCPVFSLGA 290 300 310 320 330 340 90 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Thu Mar 5 09:49:31 2009 done: Thu Mar 5 09:56:09 2009 Total Scan time: 863.120 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]