# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/fg00806.fasta.nr -Q ../query/KIAA1656.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1656, 136 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827136 sequences Expectation_n fit: rho(ln(x))= 4.5698+/-0.000183; mu= 10.1255+/- 0.010 mean_var=68.4258+/-13.182, 0's: 46 Z-trim: 48 B-trim: 0 in 0/67 Lambda= 0.155047 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|47678225|emb|CAG30233.1| Em:AC004997.11 [Homo s ( 135) 1016 235.0 2.6e-60 >>gi|47678225|emb|CAG30233.1| Em:AC004997.11 [Homo sapie (135 aa) initn: 1016 init1: 1016 opt: 1016 Z-score: 1238.9 bits: 235.0 E(): 2.6e-60 Smith-Waterman score: 1016; 100.000% identity (100.000% similar) in 135 aa overlap (2-136:1-135) 10 20 30 40 50 60 KIAA16 WMLPSGSRSPGELLPLLVQFPAMGNSYGAMTCLTRWLRRGQKGLDDVSRAANCTSSCQLC ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 MLPSGSRSPGELLPLLVQFPAMGNSYGAMTCLTRWLRRGQKGLDDVSRAANCTSSCQLC 10 20 30 40 50 70 80 90 100 110 120 KIAA16 KWICPSALGVWRGWENPGHLISNPVPRWVPSTPMPWGPGQWAAGGCVLGTSPMVWFGDPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 KWICPSALGVWRGWENPGHLISNPVPRWVPSTPMPWGPGQWAAGGCVLGTSPMVWFGDPF 60 70 80 90 100 110 130 KIAA16 QEPRRGTHRSRARISM :::::::::::::::: gi|476 QEPRRGTHRSRARISM 120 130 136 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Thu Mar 5 09:16:10 2009 done: Thu Mar 5 09:22:34 2009 Total Scan time: 1065.540 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]