# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/hg03341.fasta.nr -Q ../query/KIAA1655.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1655, 162 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826467 sequences Expectation_n fit: rho(ln(x))= 4.8101+/-0.000182; mu= 8.6476+/- 0.010 mean_var=64.4354+/-12.404, 0's: 45 Z-trim: 54 B-trim: 0 in 0/64 Lambda= 0.159776 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|119577128|gb|EAW56724.1| GLI-Kruppel family mem ( 171) 463 114.6 6.8e-24 gi|119580143|gb|EAW59739.1| hCG1817513 [Homo sapie ( 128) 436 108.3 4.1e-22 gi|47076951|dbj|BAD18412.1| unnamed protein produc ( 132) 427 106.2 1.8e-21 gi|169172641|ref|XP_001713735.1| PREDICTED: hypoth ( 96) 422 105.0 3e-21 gi|34533510|dbj|BAC86723.1| unnamed protein produc ( 165) 414 103.3 1.7e-20 gi|34534757|dbj|BAC87102.1| unnamed protein produc ( 165) 414 103.3 1.7e-20 gi|119583350|gb|EAW62946.1| hCG2038800 [Homo sapie ( 117) 411 102.5 2.1e-20 gi|119578535|gb|EAW58131.1| LAG1 longevity assuran ( 237) 412 103.0 3e-20 gi|90079549|dbj|BAE89454.1| unnamed protein produc ( 87) 407 101.5 3.1e-20 gi|119604242|gb|EAW83836.1| hCG2014340 [Homo sapie ( 132) 394 98.6 3.4e-19 gi|11493409|gb|AAG35479.1|AF130117_10 PRO0898 [Hom ( 111) 392 98.1 4.1e-19 gi|119577149|gb|EAW56745.1| zinc finger protein 30 ( 104) 386 96.7 1e-18 gi|10439739|dbj|BAB15557.1| unnamed protein produc ( 232) 385 96.7 2.2e-18 gi|168275530|dbj|BAG10485.1| SET domain-containing (2642) 390 98.7 6.5e-18 gi|193787325|dbj|BAG52531.1| unnamed protein produ ( 110) 373 93.7 8.5e-18 gi|125660014|tpd|FAA00321.1| TPA: augmented in rhe ( 89) 369 92.7 1.4e-17 gi|119622441|gb|EAX02036.1| hCG1641044, isoform CR ( 184) 371 93.4 1.7e-17 gi|90077600|dbj|BAE88480.1| unnamed protein produc ( 87) 363 91.3 3.5e-17 gi|119569304|gb|EAW48919.1| hCG2028158 [Homo sapie ( 136) 365 92.0 3.6e-17 gi|52352850|gb|AAU43855.1| HMGA2e' [Homo sapiens] ( 147) 362 91.3 6.2e-17 gi|221042236|dbj|BAH12795.1| unnamed protein produ ( 82) 356 89.7 1e-16 gi|74750399|sp|Q86U02.1|CN165_HUMAN RecName: Full= ( 117) 357 90.1 1.1e-16 gi|222834592|gb|EEE73055.1| predicted protein [Pop ( 194) 354 89.5 2.7e-16 gi|7021164|dbj|BAA91396.1| unnamed protein product ( 208) 348 88.2 7.5e-16 gi|148744318|gb|AAI42620.1| LAMB4 protein [Homo sa ( 772) 343 87.5 4.6e-15 gi|34532498|dbj|BAC86448.1| unnamed protein produc ( 153) 335 85.1 4.7e-15 gi|119567938|gb|EAW47553.1| hCG1817437 [Homo sapie ( 91) 324 82.4 1.8e-14 gi|114654668|ref|XP_001155663.1| PREDICTED: adenyl ( 775) 334 85.4 1.9e-14 gi|34536355|dbj|BAC87615.1| unnamed protein produc ( 260) 327 83.4 2.6e-14 gi|3002527|gb|AAC08737.1| neuronal thread protein ( 375) 325 83.1 4.7e-14 gi|119604983|gb|EAW84577.1| hypothetical protein F ( 228) 322 82.2 5.1e-14 gi|119584738|gb|EAW64334.1| hCG2041539 [Homo sapie ( 96) 317 80.8 5.9e-14 gi|114614033|ref|XP_519148.2| PREDICTED: general t (1024) 327 83.9 7.3e-14 gi|222838934|gb|EEE77285.1| predicted protein [Pop ( 130) 317 80.9 7.4e-14 gi|119623385|gb|EAX02980.1| hCG1820679, isoform CR ( 143) 317 80.9 8e-14 gi|90080746|dbj|BAE89854.1| unnamed protein produc ( 65) 311 79.3 1.1e-13 gi|7770147|gb|AAF69609.1|AF119917_17 PRO1847 [Homo ( 76) 310 79.1 1.5e-13 gi|34526329|dbj|BAC85227.1| unnamed protein produc ( 190) 313 80.1 1.9e-13 gi|119621230|gb|EAX00825.1| hCG1989288 [Homo sapie ( 96) 307 78.5 2.9e-13 gi|119618897|gb|EAW98491.1| hCG2042307 [Homo sapie ( 94) 303 77.5 5.4e-13 gi|114581118|ref|XP_001158990.1| PREDICTED: origin ( 460) 310 79.7 6e-13 gi|16877294|gb|AAH16905.1| FAM175A protein [Homo s ( 73) 300 76.8 7.2e-13 gi|194382524|dbj|BAG64432.1| unnamed protein produ ( 140) 302 77.4 8.6e-13 gi|33341778|gb|AAQ15260.1|AF370424_1 PP2121 [Homo ( 153) 302 77.5 9.3e-13 gi|169841150|ref|ZP_02874263.1| hypothetical prote ( 90) 299 76.6 9.9e-13 gi|34535305|dbj|BAC87274.1| unnamed protein produc ( 299) 301 77.5 1.8e-12 gi|119626937|gb|EAX06532.1| hCG2031845 [Homo sapie ( 111) 296 76.0 1.9e-12 gi|119591281|gb|EAW70875.1| solute carrier family ( 62) 293 75.1 1.9e-12 gi|119595162|gb|EAW74756.1| hCG1820410 [Homo sapie ( 86) 293 75.2 2.5e-12 gi|62087364|dbj|BAD92129.1| hepatoma-derived growt ( 472) 301 77.6 2.6e-12 >>gi|119577128|gb|EAW56724.1| GLI-Kruppel family member (171 aa) initn: 497 init1: 463 opt: 463 Z-score: 585.2 bits: 114.6 E(): 6.8e-24 Smith-Waterman score: 463; 75.610% identity (82.927% similar) in 82 aa overlap (80-161:89-170) 50 60 70 80 90 100 KIAA16 ALPMLSAPCSLSLHFLLFSLSPFFFFEIRVLLYRQAGVQWCYLGSLQPLPPGFKQFSCLS :: :::.::::.::::::::::::: ::: gi|119 KPKLIAQLERGEAPWREERKCPLDLCPDGALLCCQAGIQWCYIGSLQPLPPGFKQFPCLS 60 70 80 90 100 110 110 120 130 140 150 160 KIAA16 YPSSWDYRRPPPRQANFCIFSTDGVSPCWPRWSLSLDLMIRPPQPPEVLGLQV :::::: ::. ::: :: :::::::: :: : ::.:.:::::.::::: gi|119 LLSSWDYRCTPPHLANFLYFSRDGVSPCWPGWSQSPDLVIHPPQPPKVLGLQA 120 130 140 150 160 170 >>gi|119580143|gb|EAW59739.1| hCG1817513 [Homo sapiens] (128 aa) initn: 399 init1: 399 opt: 436 Z-score: 553.3 bits: 108.3 E(): 4.1e-22 Smith-Waterman score: 436; 75.294% identity (77.647% similar) in 85 aa overlap (78-161:43-127) 50 60 70 80 90 100 KIAA16 RCALPMLSAPCSLSLHFLLFSLSPFFFFEIRVLLYRQAGV-QWCYLGSLQPLPPGFKQFS :: ::::::: :: ::::: ::::: :: gi|119 PLSPAFPLEYISTVAFEAGLLECTPELRIHRVSLYRQAGVVQWQDLGSLQSPPPGFKPFS 20 30 40 50 60 70 110 120 130 140 150 160 KIAA16 CLSYPSSWDYRRPPPRQANFCIFSTDGVSPCWPRWSLSLDLMIRPPQPPEVLGLQV ::: :::::: ::. ::::::: :::::: : :: : :::: :: ::.::::: gi|119 CLSLPSSWDYSYTPPHPANFCIFSRDGVSPCCPGWSRSPDLMICPPWPPKVLGLQA 80 90 100 110 120 >>gi|47076951|dbj|BAD18412.1| unnamed protein product [H (132 aa) initn: 412 init1: 412 opt: 427 Z-score: 541.9 bits: 106.2 E(): 1.8e-21 Smith-Waterman score: 429; 58.261% identity (72.174% similar) in 115 aa overlap (35-149:29-132) 10 20 30 40 50 60 KIAA16 SPFSLLSPAQWLCFGTHLGHVQSVSHLQWEGSVQESLRSVRNSRCALPMLSAPCSLSLHF : . ..:...:. ::.. . : gi|470 MNEKKKMLKVAREKGQVTYKGKPIRLMVGLLADTLQAIRDLG---PMFN------ISF 10 20 30 40 70 80 90 100 110 120 KIAA16 LLFSLSPFFFFEIRVLLYRQAGVQWCYLGSLQPLPPGFKQFSCLSYPSSWDYRRPPPRQA :.::. .::: :: : .:::::: :::::: :: :::::::: :::::::: : . : gi|470 LFFSF--LFFFLDRVSLCHQAGVQWHDLGSLQPPPPRFKQFSCLSLPSSWDYRRAPSHLA 50 60 70 80 90 100 130 140 150 160 KIAA16 NFCIFSTDGVSPCWPRWSLSLDLMIRPPQPPEVLGLQV :::::: :::::::: :: : :.:: gi|470 NFCIFSRDGVSPCWPGWSRSPDFMI 110 120 130 >>gi|169172641|ref|XP_001713735.1| PREDICTED: hypothetic (96 aa) initn: 419 init1: 419 opt: 422 Z-score: 537.6 bits: 105.0 E(): 3e-21 Smith-Waterman score: 422; 68.293% identity (79.268% similar) in 82 aa overlap (66-147:14-95) 40 50 60 70 80 90 KIAA16 SVQESLRSVRNSRCALPMLSAPCSLSLHFLLFSLSPFFFFEIRVLLYRQAGVQWCYLGSL ...: :.::: . :::.::: :::: gi|169 MVGDLQNCAGWTNILALYFFYFFETESHSVAQAGMQWCNLGSL 10 20 30 40 100 110 120 130 140 150 KIAA16 QPLPPGFKQFSCLSYPSSWDYRRPPPRQANFCIFSTDGVSPCWPRWSLSLDLMIRPPQPP ::::::::.::::: :::::: :::. ::::::: :::::::: :: . :: gi|169 QPLPPGFKRFSCLSLLSSWDYRWPPPHPANFCIFSRDGVSPCWPGWSQTPDLK 50 60 70 80 90 160 KIAA16 EVLGLQV >>gi|34533510|dbj|BAC86723.1| unnamed protein product [H (165 aa) initn: 407 init1: 407 opt: 414 Z-score: 524.4 bits: 103.3 E(): 1.7e-20 Smith-Waterman score: 414; 62.366% identity (74.194% similar) in 93 aa overlap (64-156:61-153) 40 50 60 70 80 90 KIAA16 EGSVQESLRSVRNSRCALPMLSAPCSLSLHFLLFSLSPFFFFEIRVLLYRQAGVQWCYLG :..: . :::: . : :::::: :: gi|345 SDCHHTGSRRRISMAFLTLCLQRISFFIVFFFFFYFLFSFFFETESLSVAQAGVQWHDLG 40 50 60 70 80 90 100 110 120 130 140 150 KIAA16 SLQPLPPGFKQFSCLSYPSSWDYRRPPPRQANFCIFSTDGVSPCWPRWSLSLDLMIRPPQ :::: ::::::::::: :::::: . : :.:::::: : : :::: :: : .:.:. :. gi|345 SLQPRPPGFKQFSCLSLPSSWDYGHTPQRSANFCIFRKDRVLPCWPGWSRSSELVIHLPR 100 110 120 130 140 150 160 KIAA16 PPEVLGLQV ::. gi|345 PPKCWDYRREPPHPA 160 >>gi|34534757|dbj|BAC87102.1| unnamed protein product [H (165 aa) initn: 407 init1: 407 opt: 414 Z-score: 524.4 bits: 103.3 E(): 1.7e-20 Smith-Waterman score: 414; 62.366% identity (74.194% similar) in 93 aa overlap (64-156:61-153) 40 50 60 70 80 90 KIAA16 EGSVQESLRSVRNSRCALPMLSAPCSLSLHFLLFSLSPFFFFEIRVLLYRQAGVQWCYLG :..: . :::: . : :::::: :: gi|345 SDCHHTGPRRRISMAFLTLCLQRISFFIVFFFFFYFLFSFFFETESLSVAQAGVQWHDLG 40 50 60 70 80 90 100 110 120 130 140 150 KIAA16 SLQPLPPGFKQFSCLSYPSSWDYRRPPPRQANFCIFSTDGVSPCWPRWSLSLDLMIRPPQ :::: ::::::::::: :::::: . : :.:::::: : : :::: :: : .:.:. :. gi|345 SLQPRPPGFKQFSCLSLPSSWDYGHTPQRSANFCIFRKDRVLPCWPGWSRSSELVIHLPR 100 110 120 130 140 150 160 KIAA16 PPEVLGLQV ::. gi|345 PPKCWDYRREPPHPA 160 >>gi|119583350|gb|EAW62946.1| hCG2038800 [Homo sapiens] (117 aa) initn: 411 init1: 411 opt: 411 Z-score: 522.7 bits: 102.5 E(): 2.1e-20 Smith-Waterman score: 411; 60.784% identity (74.510% similar) in 102 aa overlap (60-161:15-116) 30 40 50 60 70 80 KIAA16 HLQWEGSVQESLRSVRNSRCALPMLSAPCSLSLHFLLFSLSPFFFFEIRVLLYRQAGVQW : :: ... : ..::: . :::::: gi|119 FLKLQSLLFITIALLILHNFIYYLFMYLFFETESRCVAQAGVQW 10 20 30 40 90 100 110 120 130 140 KIAA16 CYLGSLQPLPPGFKQFSCLSYPSSWDYRRPPPRQANFCIFSTDGVSPCWPRWSLSLDLMI .:.::::::::::::: :: ::::::. :: :.::::: : :: :: :: . ::.: gi|119 RHLSSLQPLPPGFKQFSFLSLLSSWDYRHVLPRPAKFCIFSRDEVSSYWPGWSRTPDLVI 50 60 70 80 90 100 150 160 KIAA16 RPPQPPEVLGLQV . ::::.::::: gi|119 HLPQPPKVLGLQA 110 >>gi|119578535|gb|EAW58131.1| LAG1 longevity assurance h (237 aa) initn: 410 init1: 410 opt: 412 Z-score: 519.7 bits: 103.0 E(): 3e-20 Smith-Waterman score: 412; 74.684% identity (82.278% similar) in 79 aa overlap (84-161:159-236) 60 70 80 90 100 110 KIAA16 LSAPCSLSLHFLLFSLSPFFFFEIRVLLYRQAGVQWCY-LGSLQPLPPGFKQFSCLSYPS ::::: :. ::: :: :::::.::::: :: gi|119 QLLHVIWSYLIARIALKALIRGKMESRSVAQAGVQ-CHDLGSPQPPPPGFKRFSCLSLPS 130 140 150 160 170 180 120 130 140 150 160 KIAA16 SWDYRRPPPRQANFCIFSTDGVSPCWPRWSLSLDLMIRPPQPPEVLGLQV :::::: :: :::::.: .::: ::: :::. ::.: :: :::::::: gi|119 SWDYRRMPPGLANFCILSRNGVSLCWPGWSLTPDLVICPPWPPEVLGLQA 190 200 210 220 230 >>gi|90079549|dbj|BAE89454.1| unnamed protein product [M (87 aa) initn: 260 init1: 235 opt: 407 Z-score: 519.5 bits: 101.5 E(): 3.1e-20 Smith-Waterman score: 407; 73.418% identity (78.481% similar) in 79 aa overlap (84-161:8-86) 60 70 80 90 100 110 KIAA16 LSAPCSLSLHFLLFSLSPFFFFEIRVLLYRQAGVQWCYLGSLQPLPPGFKQFSCLSYPSS :::::: ::::: :::: : ::: ::: gi|900 MECCSVAQAGVQWRNLGSLQAPPPGFMLFFCLSLPSS 10 20 30 120 130 140 150 160 KIAA16 WDYRRPPPRQANF-CIFSTDGVSPCWPRWSLSLDLMIRPPQPPEVLGLQV :::: :::: ::: :::: :::::::: :: : ::.:. :.::.:: :: gi|900 WDYRCPPPRPANFFCIFSGDGVSPCWPGWSRSPDLVIHLPRPPKVLELQA 40 50 60 70 80 >>gi|119604242|gb|EAW83836.1| hCG2014340 [Homo sapiens] (132 aa) initn: 384 init1: 384 opt: 394 Z-score: 500.8 bits: 98.6 E(): 3.4e-19 Smith-Waterman score: 394; 60.215% identity (73.118% similar) in 93 aa overlap (60-152:1-88) 30 40 50 60 70 80 KIAA16 HLQWEGSVQESLRSVRNSRCALPMLSAPCSLSLHFLLFSLSPFFFFEIRVLLYRQAGVQW .. :.:: :.:::.. :.:::: gi|119 MTSFFVLFC---FLFFEMESHSVTQVGVQW 10 20 90 100 110 120 130 140 KIAA16 CYLGSLQPLPPGFKQFSCLSYPSSWDYRRPPPRQANFCIFSTDGVSPCWPRWSLSLDLMI .:.:::: ::::::::: : :::::::. :: .:::::: :::::::: :: . :: gi|119 RHLSSLQPPPPGFKQFSCRSLPSSWDYRHLPPSPGNFCIFSRDGVSPCWPGWSQTPDL-- 30 40 50 60 70 80 150 160 KIAA16 RPPQPPEVLGLQV :: gi|119 DPPASASPSAGITGMSHLAWPINYDSDDRIVFKQENNQNVLAKVETT 90 100 110 120 130 162 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Thu Mar 5 09:10:05 2009 done: Thu Mar 5 09:16:10 2009 Total Scan time: 1116.600 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]