# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg03341.fasta.huge -Q ../query/KIAA1655.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1655, 162 aa
 vs ./tmplib.25089 library

1987343 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 3.6215+/-0.00454; mu= 19.0795+/- 0.311
 mean_var=76.6933+/-17.757, 0's: 0 Z-trim: 1  B-trim: 0 in 0/40
 Lambda= 0.146452

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0485  ( 83 res)   hg00837                      (  83)  248 59.5 3.3e-11


>>KIAA0485  ( 83 res)   hg00837                           (83 aa)
 initn: 247 init1: 247 opt: 248  Z-score: 293.1  bits: 59.5 E(): 3.3e-11
Smith-Waterman score: 248;  52.857% identity (68.571% similar) in 70 aa overlap (64-133:1-68)

            40        50        60        70        80        90   
KIAA16 EGSVQESLRSVRNSRCALPMLSAPCSLSLHFLLFSLSPFFFFEIRVLLYRQAGVQWCYLG
                                     ..:.:.  :::::..      :::::: ::
KIAA04                               YFLYSF--FFFFEMESHSVALAGVQWCDLG
                                               10        20        

           100       110       120       130       140       150   
KIAA16 SLQPLPPGFKQFSCLSYPSSWDYRRPPPRQANFCIFSTDGVSPCWPRWSLSLDLMIRPPQ
       ::::  : :..::::: :::::::  ::  . : ..   :                    
KIAA04 SLQPPSPRFRRFSCLSLPSSWDYRCTPPAWVIFVFLVEMGFQHVGQADLGTPDLK     
       30        40        50        60        70        80        

           160  
KIAA16 PPEVLGLQV




162 residues in 1 query   sequences
1987343 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:11:50 2008 done: Thu Dec 18 15:11:51 2008
 Total Scan time:  0.240 Total Display time:  0.000

Function used was FASTA [version 34.26.5 April 26, 2007]