# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/fg06691.fasta.nr -Q ../query/KIAA1653.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1653, 193 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826812 sequences Expectation_n fit: rho(ln(x))= 4.6166+/-0.000181; mu= 9.7813+/- 0.010 mean_var=60.0171+/-11.854, 0's: 41 Z-trim: 43 B-trim: 2721 in 1/65 Lambda= 0.165553 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|182676484|sp|Q9BYA7.2|PRODL_HUMAN RecName: Full ( 186) 1276 312.6 2.2e-83 gi|114685197|ref|XP_525525.2| PREDICTED: similar t ( 354) 905 224.2 1.7e-56 gi|62088524|dbj|BAD92709.1| Proline oxidase, mitoc ( 284) 878 217.7 1.2e-54 gi|110002585|gb|AAI18598.1| PRODH protein [Homo sa ( 492) 878 217.9 1.9e-54 gi|112292452|gb|AAI21810.1| PRODH protein [Homo sa ( 492) 878 217.9 1.9e-54 gi|2677802|gb|AAB88789.1| proline dehydrogenase/pr ( 516) 878 217.9 2e-54 gi|119364639|sp|O43272.2|PROD_HUMAN RecName: Full= ( 516) 878 217.9 2e-54 gi|63102259|gb|AAH94736.1| PRODH protein [Homo sap ( 544) 878 217.9 2e-54 gi|6649581|gb|AAF21464.1|U79754_1 proline oxidase ( 600) 878 218.0 2.2e-54 gi|183227691|ref|NP_057419.3| proline dehydrogenas ( 600) 878 218.0 2.2e-54 gi|119623478|gb|EAX03073.1| proline dehydrogenase ( 600) 878 218.0 2.2e-54 gi|45946858|gb|AAH68260.1| PRODH protein [Homo sap ( 601) 878 218.0 2.2e-54 gi|73995889|ref|XP_534757.2| PREDICTED: similar to ( 639) 844 209.9 6.4e-52 gi|149758669|ref|XP_001487976.1| PREDICTED: prolin ( 599) 829 206.3 7.3e-51 gi|117306481|gb|AAI25328.1| Prodh protein [Mus mus ( 497) 799 199.0 9.1e-49 gi|6649587|gb|AAF21467.1|U80020_1 brain and kidney ( 593) 799 199.1 1e-48 gi|118601004|ref|NP_035302.2| proline dehydrogenas ( 599) 799 199.1 1.1e-48 gi|149019772|gb|EDL77920.1| rCG36710, isoform CRA_ ( 466) 792 197.3 2.8e-48 gi|195539908|gb|AAI68225.1| LOC680409 protein [Rat ( 329) 788 196.3 4.1e-48 gi|74184277|dbj|BAE25683.1| unnamed protein produc ( 599) 790 196.9 4.7e-48 gi|109494718|ref|XP_001065003.1| PREDICTED: simila ( 599) 788 196.5 6.5e-48 gi|6685799|sp|Q9WU79.1|PROD_MOUSE RecName: Full=Pr ( 497) 777 193.8 3.5e-47 gi|109493571|ref|XP_001058756.1| PREDICTED: simila ( 594) 767 191.5 2.1e-46 gi|209413776|ref|NP_001129250.1| proline dehydroge ( 599) 767 191.5 2.1e-46 gi|109939957|gb|AAI18354.1| Proline dehydrogenase ( 593) 760 189.8 6.6e-46 gi|66910776|gb|AAH97700.1| MGC115247 protein [Xeno ( 617) 751 187.6 3e-45 gi|118098813|ref|XP_001234062.1| PREDICTED: hypoth ( 527) 744 185.9 8.6e-45 gi|189538284|ref|XP_700477.3| PREDICTED: similar t ( 434) 720 180.1 3.9e-43 gi|189538506|ref|XP_001336877.2| PREDICTED: simila ( 540) 719 180.0 5.5e-43 gi|198285457|gb|ACH85267.1| proline dehydrogenase ( 562) 668 167.8 2.6e-39 gi|210103179|gb|EEA51217.1| hypothetical protein B ( 488) 634 159.6 6.6e-37 gi|72178123|ref|XP_788908.1| PREDICTED: hypothetic ( 295) 595 150.1 2.8e-34 gi|109133266|ref|XP_001088786.1| PREDICTED: simila ( 95) 571 144.0 6.4e-33 gi|21291016|gb|EAA03161.1| AGAP012718-PA [Anophele ( 247) 571 144.3 1.3e-32 gi|91087919|ref|XP_975998.1| PREDICTED: similar to ( 614) 573 145.1 1.9e-32 gi|212511759|gb|EEB14647.1| proline oxidase, putat ( 628) 569 144.2 3.8e-32 gi|157019138|gb|EAA06094.4| AGAP003860-PA [Anophel ( 356) 566 143.3 4e-32 gi|108870085|gb|EAT34310.1| proline oxidase [Aedes ( 384) 565 143.1 5e-32 gi|215491912|gb|EEC01553.1| proline oxidase, putat ( 508) 564 142.9 7.3e-32 gi|194150724|gb|EDW66408.1| GJ16015 [Drosophila vi ( 597) 562 142.5 1.2e-31 gi|167870101|gb|EDS33484.1| proline oxidase [Culex ( 449) 558 141.4 1.8e-31 gi|68061077|sp|O45228.2|PROD_CAEEL RecName: Full=P ( 616) 554 140.6 4.4e-31 gi|194114591|gb|EDW36634.1| GL16015 [Drosophila pe ( 230) 548 138.8 5.6e-31 gi|194167631|gb|EDW82532.1| GK25083 [Drosophila wi ( 691) 552 140.2 6.7e-31 gi|198145415|gb|EAL32355.2| GA12802 [Drosophila ps ( 679) 548 139.2 1.3e-30 gi|193907526|gb|EDW06393.1| GI21543 [Drosophila mo ( 605) 546 138.7 1.6e-30 gi|193893389|gb|EDV92255.1| GH24816 [Drosophila gr ( 696) 546 138.7 1.8e-30 gi|22833198|gb|AAF50819.2| sluggish A, isoform C [ ( 356) 539 136.8 3.5e-30 gi|66559229|ref|XP_395275.2| PREDICTED: similar to ( 528) 540 137.2 4e-30 gi|22833197|gb|AAF50820.2| sluggish A, isoform B [ ( 669) 539 137.0 5.7e-30 >>gi|182676484|sp|Q9BYA7.2|PRODL_HUMAN RecName: Full=Put (186 aa) initn: 1276 init1: 1276 opt: 1276 Z-score: 1653.3 bits: 312.6 E(): 2.2e-83 Smith-Waterman score: 1276; 100.000% identity (100.000% similar) in 186 aa overlap (8-193:1-186) 10 20 30 40 50 60 KIAA16 RGCYSGWMSCPRRAVPLGQRAGALGTRDSCRRGHLPHLSNSCSHSPTPCASQKATEMGVR ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 MSCPRRAVPLGQRAGALGTRDSCRRGHLPHLSNSCSHSPTPCASQKATEMGVR 10 20 30 40 50 70 80 90 100 110 120 KIAA16 LMVDAEQTYFQPAISRLTLEMQRKFNVEKLLIFNTYQCYLKDAYDNVTLDMELAHREGWC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 LMVDAEQTYFQPAISRLTLEMQRKFNVEKLLIFNTYQCYLKDAYDNVTLDMELAHREGWC 60 70 80 90 100 110 130 140 150 160 170 180 KIAA16 FGAKPVRGAYLAQERACAAEIGYEDPINPMYEATNTMYHRCLDYVLEELKHNAKAKVMVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 FGAKPVRGAYLAQERACAAEIGYEDPINPMYEATNTMYHRCLDYVLEELKHNAKAKVMVA 120 130 140 150 160 170 190 KIAA16 SHNEDTVRFALRR ::::::::::::: gi|182 SHNEDTVRFALRR 180 >>gi|114685197|ref|XP_525525.2| PREDICTED: similar to PR (354 aa) initn: 905 init1: 905 opt: 905 Z-score: 1170.6 bits: 224.2 E(): 1.7e-56 Smith-Waterman score: 905; 95.105% identity (97.902% similar) in 143 aa overlap (51-193:212-354) 30 40 50 60 70 80 KIAA16 AGALGTRDSCRRGHLPHLSNSCSHSPTPCASQKATEMGVRLMVDAEQTYFQPAISRLTLE ..:::::::::::::::::::::::::::: gi|114 QTGQLEPLLSRFTEEEELQMTRMLQWMDVLAKKATEMGVRLMVDAEQTYFQPAISRLTLE 190 200 210 220 230 240 90 100 110 120 130 140 KIAA16 MQRKFNVEKLLIFNTYQCYLKDAYDNVTLDMELAHREGWCFGAKPVRGAYLAQERACAAE ::::::::: :::::::::::::::::::::::::::::::::: ::::.:::::::::: gi|114 MQRKFNVEKPLIFNTYQCYLKDAYDNVTLDMELAHREGWCFGAKLVRGAHLAQERACAAE 250 260 270 280 290 300 150 160 170 180 190 KIAA16 IGYEDPINPMYEATNTMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRR ::::::::: :::::.::::::::::::::::::::::::::::::::::::: gi|114 IGYEDPINPTYEATNAMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRR 310 320 330 340 350 >>gi|62088524|dbj|BAD92709.1| Proline oxidase, mitochond (284 aa) initn: 878 init1: 878 opt: 878 Z-score: 1137.0 bits: 217.7 E(): 1.2e-54 Smith-Waterman score: 878; 93.706% identity (97.203% similar) in 143 aa overlap (51-193:51-193) 30 40 50 60 70 80 KIAA16 AGALGTRDSCRRGHLPHLSNSCSHSPTPCASQKATEMGVRLMVDAEQTYFQPAISRLTLE ..:::::::::::::::::::::::::::: gi|620 QTGQLEPLLSRFTEEEELQMTRMLQRMDVLAKKATEMGVRLMVDAEQTYFQPAISRLTLE 30 40 50 60 70 80 90 100 110 120 130 140 KIAA16 MQRKFNVEKLLIFNTYQCYLKDAYDNVTLDMELAHREGWCFGAKPVRGAYLAQERACAAE ::::::::: ::::::::::::::::::::.:::.::::::::: ::::::::::: ::: gi|620 MQRKFNVEKPLIFNTYQCYLKDAYDNVTLDVELARREGWCFGAKLVRGAYLAQERARAAE 90 100 110 120 130 140 150 160 170 180 190 KIAA16 IGYEDPINPMYEATNTMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRR ::::::::: :::::.::::::::::::::::::::::::::::::::::::: gi|620 IGYEDPINPTYEATNAMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRRMEELGLH 150 160 170 180 190 200 gi|620 PADHQVYFGQLLGMCDQISFPLGQAGYPVYKYVPYGPVMEVLPYLSRRALENSSFMKGTH 210 220 230 240 250 260 >>gi|110002585|gb|AAI18598.1| PRODH protein [Homo sapien (492 aa) initn: 878 init1: 878 opt: 878 Z-score: 1133.8 bits: 217.9 E(): 1.9e-54 Smith-Waterman score: 878; 93.706% identity (97.203% similar) in 143 aa overlap (51-193:259-401) 30 40 50 60 70 80 KIAA16 AGALGTRDSCRRGHLPHLSNSCSHSPTPCASQKATEMGVRLMVDAEQTYFQPAISRLTLE ..:::::::::::::::::::::::::::: gi|110 QTGQLEPLLSRFTEEEELQMTRMLQRMDVLAKKATEMGVRLMVDAEQTYFQPAISRLTLE 230 240 250 260 270 280 90 100 110 120 130 140 KIAA16 MQRKFNVEKLLIFNTYQCYLKDAYDNVTLDMELAHREGWCFGAKPVRGAYLAQERACAAE ::::::::: ::::::::::::::::::::.:::.::::::::: ::::::::::: ::: gi|110 MQRKFNVEKPLIFNTYQCYLKDAYDNVTLDVELARREGWCFGAKLVRGAYLAQERARAAE 290 300 310 320 330 340 150 160 170 180 190 KIAA16 IGYEDPINPMYEATNTMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRR ::::::::: :::::.::::::::::::::::::::::::::::::::::::: gi|110 IGYEDPINPTYEATNAMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRRMEELGLH 350 360 370 380 390 400 gi|110 PADHRVYFGQLLGMCDQISFPLGQAGYPVYKYVPYGPVMEVLPYLSRRALENSSLMKGTH 410 420 430 440 450 460 >>gi|112292452|gb|AAI21810.1| PRODH protein [Homo sapien (492 aa) initn: 878 init1: 878 opt: 878 Z-score: 1133.8 bits: 217.9 E(): 1.9e-54 Smith-Waterman score: 878; 93.706% identity (97.203% similar) in 143 aa overlap (51-193:259-401) 30 40 50 60 70 80 KIAA16 AGALGTRDSCRRGHLPHLSNSCSHSPTPCASQKATEMGVRLMVDAEQTYFQPAISRLTLE ..:::::::::::::::::::::::::::: gi|112 QTGQLEPLLSRFTEEEELQMTRMLQRMDVLAKKATEMGVRLMVDAEQTYFQPAISRLTLE 230 240 250 260 270 280 90 100 110 120 130 140 KIAA16 MQRKFNVEKLLIFNTYQCYLKDAYDNVTLDMELAHREGWCFGAKPVRGAYLAQERACAAE ::::::::: ::::::::::::::::::::.:::.::::::::: ::::::::::: ::: gi|112 MQRKFNVEKPLIFNTYQCYLKDAYDNVTLDVELARREGWCFGAKLVRGAYLAQERARAAE 290 300 310 320 330 340 150 160 170 180 190 KIAA16 IGYEDPINPMYEATNTMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRR ::::::::: :::::.::::::::::::::::::::::::::::::::::::: gi|112 IGYEDPINPTYEATNAMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRRMEELGLH 350 360 370 380 390 400 gi|112 PADHQVYFGQLLGMCDQISFPLGQAGYPVYKYVPYGPVMEVLPYLSRRALENSSLMKGTH 410 420 430 440 450 460 >>gi|2677802|gb|AAB88789.1| proline dehydrogenase/prolin (516 aa) initn: 878 init1: 878 opt: 878 Z-score: 1133.5 bits: 217.9 E(): 2e-54 Smith-Waterman score: 878; 93.706% identity (97.203% similar) in 143 aa overlap (51-193:283-425) 30 40 50 60 70 80 KIAA16 AGALGTRDSCRRGHLPHLSNSCSHSPTPCASQKATEMGVRLMVDAEQTYFQPAISRLTLE ..:::::::::::::::::::::::::::: gi|267 QTGQLEPLLSRFTEEEELQMTRMLQRMDVLAKKATEMGVRLMVDAEQTYFQPAISRLTLE 260 270 280 290 300 310 90 100 110 120 130 140 KIAA16 MQRKFNVEKLLIFNTYQCYLKDAYDNVTLDMELAHREGWCFGAKPVRGAYLAQERACAAE ::::::::: ::::::::::::::::::::.:::.::::::::: ::::::::::: ::: gi|267 MQRKFNVEKPLIFNTYQCYLKDAYDNVTLDVELARREGWCFGAKLVRGAYLAQERARAAE 320 330 340 350 360 370 150 160 170 180 190 KIAA16 IGYEDPINPMYEATNTMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRR ::::::::: :::::.::::::::::::::::::::::::::::::::::::: gi|267 IGYEDPINPTYEATNAMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRRMEELGLH 380 390 400 410 420 430 gi|267 PADHQVYFGQLLGMCDQISFPLGQAGYPVYKYVPYGPVMEVLPYLSRRALENSSLMKGTH 440 450 460 470 480 490 >>gi|119364639|sp|O43272.2|PROD_HUMAN RecName: Full=Prol (516 aa) initn: 878 init1: 878 opt: 878 Z-score: 1133.5 bits: 217.9 E(): 2e-54 Smith-Waterman score: 878; 93.706% identity (97.203% similar) in 143 aa overlap (51-193:283-425) 30 40 50 60 70 80 KIAA16 AGALGTRDSCRRGHLPHLSNSCSHSPTPCASQKATEMGVRLMVDAEQTYFQPAISRLTLE ..:::::::::::::::::::::::::::: gi|119 QTGQLEPLLSRFTEEEELQMTRMLQRMDVLAKKATEMGVRLMVDAEQTYFQPAISRLTLE 260 270 280 290 300 310 90 100 110 120 130 140 KIAA16 MQRKFNVEKLLIFNTYQCYLKDAYDNVTLDMELAHREGWCFGAKPVRGAYLAQERACAAE ::::::::: ::::::::::::::::::::.:::.::::::::: ::::::::::: ::: gi|119 MQRKFNVEKPLIFNTYQCYLKDAYDNVTLDVELARREGWCFGAKLVRGAYLAQERARAAE 320 330 340 350 360 370 150 160 170 180 190 KIAA16 IGYEDPINPMYEATNTMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRR ::::::::: :::::.::::::::::::::::::::::::::::::::::::: gi|119 IGYEDPINPTYEATNAMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRRMEELGLH 380 390 400 410 420 430 gi|119 PADHQVYFGQLLGMCDQISFPLGQAGYPVYKYVPYGPVMEVLPYLSRRALENSSLMKGTH 440 450 460 470 480 490 >>gi|63102259|gb|AAH94736.1| PRODH protein [Homo sapiens (544 aa) initn: 878 init1: 878 opt: 878 Z-score: 1133.2 bits: 217.9 E(): 2e-54 Smith-Waterman score: 878; 93.706% identity (97.203% similar) in 143 aa overlap (51-193:311-453) 30 40 50 60 70 80 KIAA16 AGALGTRDSCRRGHLPHLSNSCSHSPTPCASQKATEMGVRLMVDAEQTYFQPAISRLTLE ..:::::::::::::::::::::::::::: gi|631 QTGQLEPLLSRFTEEEELQMTRMLQRMDVLAKKATEMGVRLMVDAEQTYFQPAISRLTLE 290 300 310 320 330 340 90 100 110 120 130 140 KIAA16 MQRKFNVEKLLIFNTYQCYLKDAYDNVTLDMELAHREGWCFGAKPVRGAYLAQERACAAE ::::::::: ::::::::::::::::::::.:::.::::::::: ::::::::::: ::: gi|631 MQRKFNVEKPLIFNTYQCYLKDAYDNVTLDVELARREGWCFGAKLVRGAYLAQERARAAE 350 360 370 380 390 400 150 160 170 180 190 KIAA16 IGYEDPINPMYEATNTMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRR ::::::::: :::::.::::::::::::::::::::::::::::::::::::: gi|631 IGYEDPINPTYEATNAMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRRMEELGLH 410 420 430 440 450 460 gi|631 PADHQVYFGQLLGMCDQISFPLGQAGYPVYKYVPYGPVMEVLPYLSRRALENSSLMKGTH 470 480 490 500 510 520 >>gi|6649581|gb|AAF21464.1|U79754_1 proline oxidase 2 [H (600 aa) initn: 878 init1: 878 opt: 878 Z-score: 1132.6 bits: 218.0 E(): 2.2e-54 Smith-Waterman score: 878; 93.706% identity (97.203% similar) in 143 aa overlap (51-193:367-509) 30 40 50 60 70 80 KIAA16 AGALGTRDSCRRGHLPHLSNSCSHSPTPCASQKATEMGVRLMVDAEQTYFQPAISRLTLE ..:::::::::::::::::::::::::::: gi|664 QTGQLEPLLSGFTEEEELQMTRMLQRMDVLAKKATEMGVRLMVDAEQTYFQPAISRLTLE 340 350 360 370 380 390 90 100 110 120 130 140 KIAA16 MQRKFNVEKLLIFNTYQCYLKDAYDNVTLDMELAHREGWCFGAKPVRGAYLAQERACAAE ::::::::: ::::::::::::::::::::.:::.::::::::: ::::::::::: ::: gi|664 MQRKFNVEKPLIFNTYQCYLKDAYDNVTLDVELARREGWCFGAKLVRGAYLAQERARAAE 400 410 420 430 440 450 150 160 170 180 190 KIAA16 IGYEDPINPMYEATNTMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRR ::::::::: :::::.::::::::::::::::::::::::::::::::::::: gi|664 IGYEDPINPTYEATNAMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRRMEELGLH 460 470 480 490 500 510 gi|664 PADHQVYFGQLLGMCDQISFPLGQAGYPVYKYVPYGPVMEVLPYLSRRALENSSLMKGTH 520 530 540 550 560 570 >>gi|183227691|ref|NP_057419.3| proline dehydrogenase 1 (600 aa) initn: 878 init1: 878 opt: 878 Z-score: 1132.6 bits: 218.0 E(): 2.2e-54 Smith-Waterman score: 878; 93.706% identity (97.203% similar) in 143 aa overlap (51-193:367-509) 30 40 50 60 70 80 KIAA16 AGALGTRDSCRRGHLPHLSNSCSHSPTPCASQKATEMGVRLMVDAEQTYFQPAISRLTLE ..:::::::::::::::::::::::::::: gi|183 QTGQLEPLLSRFTEEEELQMTRMLQRMDVLAKKATEMGVRLMVDAEQTYFQPAISRLTLE 340 350 360 370 380 390 90 100 110 120 130 140 KIAA16 MQRKFNVEKLLIFNTYQCYLKDAYDNVTLDMELAHREGWCFGAKPVRGAYLAQERACAAE ::::::::: ::::::::::::::::::::.:::.::::::::: ::::::::::: ::: gi|183 MQRKFNVEKPLIFNTYQCYLKDAYDNVTLDVELARREGWCFGAKLVRGAYLAQERARAAE 400 410 420 430 440 450 150 160 170 180 190 KIAA16 IGYEDPINPMYEATNTMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRR ::::::::: :::::.::::::::::::::::::::::::::::::::::::: gi|183 IGYEDPINPTYEATNAMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRRMEELGLH 460 470 480 490 500 510 gi|183 PADHRVYFGQLLGMCDQISFPLGQAGYPVYKYVPYGPVMEVLPYLSRRALENSSLMKGTH 520 530 540 550 560 570 193 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Thu Mar 5 08:57:08 2009 done: Thu Mar 5 09:03:26 2009 Total Scan time: 1243.490 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]