hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-08510362/chunk_1/iprscan-20080502-08510362.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1650 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00536.20.fs SAM domain (Sterile alpha motif) 87.4 4.2e-25 1 PF00536.20.ls SAM domain (Sterile alpha motif) 89.3 1.1e-23 1 PF07647.7.fs SAM domain (Sterile alpha motif) 55.2 1.6e-15 1 PF07647.7.ls SAM domain (Sterile alpha motif) 57.1 5.3e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07647.7.fs 1/1 731 797 .] 1 72 [] 55.2 1.6e-15 PF07647.7.ls 1/1 731 797 .] 1 72 [] 57.1 5.3e-14 PF00536.20.fs 1/1 732 795 .. 1 65 [] 87.4 4.2e-25 PF00536.20.ls 1/1 732 795 .. 1 65 [] 89.3 1.1e-23 Alignments of top-scoring domains: PF07647.7.fs: domain 1 of 1, from 731 to 797: score 55.2, E = 1.6e-15 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa ws +v++WLesi+l g+++d F+d++i+g +l + lt +d KIAA1650 731 LQLWSKFDVGDWLESIHL-GEHRDRFEDHEIEG-AHL-PALTKDDF- 773 klalGitsvghRkkilkkiqelkqq<-* +lG+t vghR i +++ +l ++ KIAA1650 774 V-ELGVTRVGHRMNIERALRQLDGS 797 PF07647.7.ls: domain 1 of 1, from 731 to 797: score 57.1, E = 5.3e-14 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa ws +v++WLesi+l g+++d F+d++i+g +l + lt +d KIAA1650 731 LQLWSKFDVGDWLESIHL-GEHRDRFEDHEIEG-AHL-PALTKDDF- 773 klalGitsvghRkkilkkiqelkqq<-* +lG+t vghR i +++ +l ++ KIAA1650 774 V-ELGVTRVGHRMNIERALRQLDGS 797 PF00536.20.fs: domain 1 of 1, from 732 to 795: score 87.4, E = 4.2e-25 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG + ws ++Vg+WLesi+lg+++d F + ++i g +l+ lt++D+++lG KIAA1650 732 QLWSKFDVGDWLESIHLGEHRDRF-EDHEIEGAHLPALTKDDFVELG 777 vtllGHrkKIlssIqgLk<-* vt++GHr+ I +++++L KIAA1650 778 VTRVGHRMNIERALRQLD 795 PF00536.20.ls: domain 1 of 1, from 732 to 795: score 89.3, E = 1.1e-23 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG + ws ++Vg+WLesi+lg+++d F + ++i g +l+ lt++D+++lG KIAA1650 732 QLWSKFDVGDWLESIHLGEHRDRF-EDHEIEGAHLPALTKDDFVELG 777 vtllGHrkKIlssIqgLk<-* vt++GHr+ I +++++L KIAA1650 778 VTRVGHRMNIERALRQLD 795 //