hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-08442411/chunk_1/iprscan-20080502-08442411.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1646 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00046 21.8 0.0004 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00046 1/1 76 222 .. 1 157 [] 21.8 0.0004 Alignments of top-scoring domains: SM00046: domain 1 of 1, from 76 to 222: score 21.8, E = 0.0004 *->plLVfvNPkSGggqgeellkseskllrkfrelLnprqVfdltktggp lLVf+NP +G+gqg+ + e+k+ + f ++ +++++ + + KIAA1646 76 HLLVFINPFGGKGQGK--RIYERKVAPLFTLASITTDIIVTEHANQA 120 dvglelefrdvpkfkeqsdqkgddrvlvcGGDGTvgwVlnaldkrelplq ++ l ++k+ d++++ GGDG +++Vl +l r+++++ KIAA1646 121 KETLYE--INIDKY---------DGIVCVGGDGMFSEVLHGLIGRTQRSA 159 cq.v.edrefpePP...vailPlGTGNdLarvLgwgggydg.inekllki + + r P + +++i+P G+ +v+ + g ++ + ++l+ + KIAA1646 160 GVdQnHPRAVLVPSslrIGIIPAGST---DCVCYSTVGTSDaETSALHIV 206 lkealeeadtvkldrW<-* +++ l+++ ++ + KIAA1646 207 VGDSLAMDVSSVHHNS 222 //