hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08424789/chunk_1/iprscan-20080502-08424789.nocrc
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Query sequence: KIAA1645
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                        99.7    7.8e-27   6
PF00400.22.fs WD domain, G-beta repeat                        95.7    5.5e-26   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.ls   1/6      69   112 ..     1    38 []    22.6   0.0013
PF00400.22.fs   1/6      69   112 ..     1    38 []    20.6  7.7e-05
PF00400.22.fs   2/6     116   155 ..     1    38 []    12.3    0.017
PF00400.22.fs   5/6     318   340 ..    15    38 .]    13.6   0.0072
PF00400.22.ls   6/6     344   381 ..     1    38 []    31.4  2.9e-06
PF00400.22.fs   6/6     344   381 ..     1    38 []    29.5  2.5e-07

Alignments of top-scoring domains:
PF00400.22.ls: domain 1 of 6, from 69 to 112: score 22.6, E = 0.0013
                   *->geck.vl.gHtstVtcvafspd....sgpllasgSrDgtikiWd<-*
                       +++ vl+g +s+V ++ f+  + + ++pll+sgS  g ++iW+   
    KIAA1645    69    PDPQfVLrGTQSPVHALHFCEGaqaqGRPLLFSGSQSGLVHIWS    112  

PF00400.22.fs: domain 1 of 6, from 69 to 112: score 20.6, E = 7.7e-05
                   *->geck.vl.gHtstVtcvafspd....sgpllasgSrDgtikiWd<-*
                       +++ vl+g +s+V ++ f+  + + ++pll+sgS  g ++iW+   
    KIAA1645    69    PDPQfVLrGTQSPVHALHFCEGaqaqGRPLLFSGSQSGLVHIWS    112  

PF00400.22.fs: domain 2 of 6, from 116 to 155: score 12.3, E = 0.017
                   *->geck.vl.gHtstVtcvafspd..sgpllasgSrDgtikiWd<-*
                      +  +++l+gH  +  cv + +  ++g++l+s +rD ++++Wd   
    KIAA1645   116    RRAVtTLdGH--GGQCVTWLQTlpQGRQLLSQGRDLKLCLWD    155  

PF00400.22.fs: domain 5 of 6, from 318 to 340: score 13.6, E = 0.0072
                   *->vafspdsgpllasgSrDgtikiWd<-*
                      v + pd +++la++++D+ i++++   
    KIAA1645   318    VTIRPD-RKILATAGWDHRIRVFH    340  

PF00400.22.ls: domain 6 of 6, from 344 to 381: score 31.4, E = 2.9e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       +++ vl  H+++V cvaf  d   lla gS D  i +W+   
    KIAA1645   344    MQPLaVLaFHSAAVQCVAFTAD--GLLAAGSKDQRISLWS    381  

PF00400.22.fs: domain 6 of 6, from 344 to 381: score 29.5, E = 2.5e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       +++ vl  H+++V cvaf  d   lla gS D  i +W+   
    KIAA1645   344    MQPLaVLaFHSAAVQCVAFTAD--GLLAAGSKDQRISLWS    381  

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