# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/fg07060.fasta.nr -Q ../query/KIAA1644.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1644, 132 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7824719 sequences Expectation_n fit: rho(ln(x))= 5.6625+/-0.000198; mu= 4.8739+/- 0.011 mean_var=105.7382+/-20.096, 0's: 42 Z-trim: 42 B-trim: 0 in 0/64 Lambda= 0.124726 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|109094508|ref|XP_001106595.1| PREDICTED: hypoth ( 288) 950 180.3 1.5e-43 gi|119893344|ref|XP_001256398.1| PREDICTED: simila ( 198) 905 172.1 3.2e-41 gi|148672505|gb|EDL04452.1| mCG141069 [Mus musculu ( 242) 900 171.3 6.9e-41 gi|109481095|ref|XP_576321.2| PREDICTED: hypotheti ( 240) 895 170.4 1.3e-40 gi|109482662|ref|XP_001078061.1| PREDICTED: hypoth ( 242) 895 170.4 1.3e-40 gi|194226959|ref|XP_001914739.1| PREDICTED: simila ( 242) 872 166.2 2.3e-39 gi|119593745|gb|EAW73339.1| hCG1649293 [Homo sapie ( 120) 861 164.0 5.5e-39 gi|47224385|emb|CAG08635.1| unnamed protein produc ( 194) 531 104.8 5.7e-21 gi|92096267|gb|AAI15048.1| Zgc:136242 [Danio rerio ( 203) 521 103.0 2.1e-20 gi|55250984|emb|CAH68995.1| novel protein [Danio r ( 207) 519 102.6 2.7e-20 gi|189542971|ref|XP_001921513.1| PREDICTED: hypoth ( 206) 492 97.8 7.8e-19 >>gi|109094508|ref|XP_001106595.1| PREDICTED: hypothetic (288 aa) initn: 950 init1: 950 opt: 950 Z-score: 937.9 bits: 180.3 E(): 1.5e-43 Smith-Waterman score: 950; 100.000% identity (100.000% similar) in 132 aa overlap (1-132:68-199) 10 20 30 KIAA16 KYCCNETEFQAVMQANLTASSEGYMHNNYT :::::::::::::::::::::::::::::: gi|109 KGRYHFGFHCPRLSDNKTFILCCHHNNTVFKYCCNETEFQAVMQANLTASSEGYMHNNYT 40 50 60 70 80 90 40 50 60 70 80 90 KIAA16 ALLGVWIYGFFVLMLLVLDLLYYSAMNYDICKVYLARWGIQGRWMKQDPRRWGNPARAPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ALLGVWIYGFFVLMLLVLDLLYYSAMNYDICKVYLARWGIQGRWMKQDPRRWGNPARAPR 100 110 120 130 140 150 100 110 120 130 KIAA16 PGQRAPQPQPPPGPLPQAPQAVHTLRGDAHSPPLMTFQSSSA :::::::::::::::::::::::::::::::::::::::::: gi|109 PGQRAPQPQPPPGPLPQAPQAVHTLRGDAHSPPLMTFQSSSAWTHLRLKEQAVEGPTRGA 160 170 180 190 200 210 gi|109 AMPPGLSRARERRHVPATCCTVFITAAVAGVLGDLLSLQSLSPQGQLLDVHGCVQDSAQM 220 230 240 250 260 270 >>gi|119893344|ref|XP_001256398.1| PREDICTED: similar to (198 aa) initn: 905 init1: 905 opt: 905 Z-score: 896.2 bits: 172.1 E(): 3.2e-41 Smith-Waterman score: 905; 94.697% identity (98.485% similar) in 132 aa overlap (1-132:67-198) 10 20 30 KIAA16 KYCCNETEFQAVMQANLTASSEGYMHNNYT :::::::::::::::::::.:::::::::: gi|119 KGRYHFGFHCPRLSDNKTFILCCHHNNTVFKYCCNETEFQAVMQANLTAGSEGYMHNNYT 40 50 60 70 80 90 40 50 60 70 80 90 KIAA16 ALLGVWIYGFFVLMLLVLDLLYYSAMNYDICKVYLARWGIQGRWMKQDPRRWGNPARAPR ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|119 ALLGVWIYGFFVLMLLVLDLLYYSAMNYDICKVYLARWGIHGRWMKQDPRRWGNPARAPR 100 110 120 130 140 150 100 110 120 130 KIAA16 PGQRAPQPQPPPGPLPQAPQAVHTLRGDAHSPPLMTFQSSSA ::: :::::::::::::::::::::. :.:.::::::::::: gi|119 PGQPAPQPQPPPGPLPQAPQAVHTLQRDSHTPPLMTFQSSSA 160 170 180 190 >>gi|148672505|gb|EDL04452.1| mCG141069 [Mus musculus] (242 aa) initn: 900 init1: 900 opt: 900 Z-score: 890.3 bits: 171.3 E(): 6.9e-41 Smith-Waterman score: 900; 94.697% identity (96.970% similar) in 132 aa overlap (1-132:111-242) 10 20 30 KIAA16 KYCCNETEFQAVMQANLTASSEGYMHNNYT :::::::::::::::::::. ::::::::: gi|148 KGRYHFGFHCPRLSDNKTFVLCCHHNNTVFKYCCNETEFQAVMQANLTAGPEGYMHNNYT 90 100 110 120 130 140 40 50 60 70 80 90 KIAA16 ALLGVWIYGFFVLMLLVLDLLYYSAMNYDICKVYLARWGIQGRWMKQDPRRWGNPARAPR ::::::::::::: :::::::::::::::::::::.:::::::::::::::::::::::: gi|148 ALLGVWIYGFFVLTLLVLDLLYYSAMNYDICKVYLTRWGIQGRWMKQDPRRWGNPARAPR 150 160 170 180 190 200 100 110 120 130 KIAA16 PGQRAPQPQPPPGPLPQAPQAVHTLRGDAHSPPLMTFQSSSA ::: ::::::::: ::::::::::::::.::::::::::::: gi|148 PGQPAPQPQPPPGTLPQAPQAVHTLRGDTHSPPLMTFQSSSA 210 220 230 240 >>gi|109481095|ref|XP_576321.2| PREDICTED: hypothetical (240 aa) initn: 895 init1: 895 opt: 895 Z-score: 885.5 bits: 170.4 E(): 1.3e-40 Smith-Waterman score: 895; 93.939% identity (96.970% similar) in 132 aa overlap (1-132:109-240) 10 20 30 KIAA16 KYCCNETEFQAVMQANLTASSEGYMHNNYT :::::::::::::::::::. ::::::::: gi|109 KGRYHFGFHCPRLSDNKTFVLCCHHNNTVFKYCCNETEFQAVMQANLTAGPEGYMHNNYT 80 90 100 110 120 130 40 50 60 70 80 90 KIAA16 ALLGVWIYGFFVLMLLVLDLLYYSAMNYDICKVYLARWGIQGRWMKQDPRRWGNPARAPR ::::::::::::: :::::::::::::::::::::.:::::::::::::::::::::::: gi|109 ALLGVWIYGFFVLTLLVLDLLYYSAMNYDICKVYLTRWGIQGRWMKQDPRRWGNPARAPR 140 150 160 170 180 190 100 110 120 130 KIAA16 PGQRAPQPQPPPGPLPQAPQAVHTLRGDAHSPPLMTFQSSSA ::: ::::::::: ::::::::::::::.::::::.:::::: gi|109 PGQPAPQPQPPPGALPQAPQAVHTLRGDTHSPPLMAFQSSSA 200 210 220 230 240 >>gi|109482662|ref|XP_001078061.1| PREDICTED: hypothetic (242 aa) initn: 895 init1: 895 opt: 895 Z-score: 885.4 bits: 170.4 E(): 1.3e-40 Smith-Waterman score: 895; 93.939% identity (96.970% similar) in 132 aa overlap (1-132:111-242) 10 20 30 KIAA16 KYCCNETEFQAVMQANLTASSEGYMHNNYT :::::::::::::::::::. ::::::::: gi|109 KGRYHFGFHCPRLSDNKTFVLCCHHNNTVFKYCCNETEFQAVMQANLTAGPEGYMHNNYT 90 100 110 120 130 140 40 50 60 70 80 90 KIAA16 ALLGVWIYGFFVLMLLVLDLLYYSAMNYDICKVYLARWGIQGRWMKQDPRRWGNPARAPR ::::::::::::: :::::::::::::::::::::.:::::::::::::::::::::::: gi|109 ALLGVWIYGFFVLTLLVLDLLYYSAMNYDICKVYLTRWGIQGRWMKQDPRRWGNPARAPR 150 160 170 180 190 200 100 110 120 130 KIAA16 PGQRAPQPQPPPGPLPQAPQAVHTLRGDAHSPPLMTFQSSSA ::: ::::::::: ::::::::::::::.::::::.:::::: gi|109 PGQPAPQPQPPPGALPQAPQAVHTLRGDTHSPPLMAFQSSSA 210 220 230 240 >>gi|194226959|ref|XP_001914739.1| PREDICTED: similar to (242 aa) initn: 872 init1: 872 opt: 872 Z-score: 863.0 bits: 166.2 E(): 2.3e-39 Smith-Waterman score: 872; 90.152% identity (98.485% similar) in 132 aa overlap (1-132:67-198) 10 20 30 KIAA16 KYCCNETEFQAVMQANLTASSEGYMHNNYT :::::::::::::::::::.:::: ::::: gi|194 KGRYHFGFHCPRLSDNKTFILCCHHNNTVFKYCCNETEFQAVMQANLTAGSEGYTHNNYT 40 50 60 70 80 90 40 50 60 70 80 90 KIAA16 ALLGVWIYGFFVLMLLVLDLLYYSAMNYDICKVYLARWGIQGRWMKQDPRRWGNPARAPR ::::::::::::: ::.:::::::::::::::::::::::.::::::::::::::::.:. gi|194 ALLGVWIYGFFVLTLLALDLLYYSAMNYDICKVYLARWGIHGRWMKQDPRRWGNPARVPQ 100 110 120 130 140 150 100 110 120 130 KIAA16 PGQRAPQPQPPPGPLPQAPQAVHTLRGDAHSPPLMTFQSSSA :::.:::::::::::::::::..::.::::.::::::::.:: gi|194 PGQQAPQPQPPPGPLPQAPQAMRTLQGDAHGPPLMTFQSASAWDRKGCTIGVRVRPPLQP 160 170 180 190 200 210 gi|194 DSTSPGARRHQFLELENGDPRQHLGV 220 230 240 >>gi|119593745|gb|EAW73339.1| hCG1649293 [Homo sapiens] (120 aa) initn: 861 init1: 861 opt: 861 Z-score: 856.2 bits: 164.0 E(): 5.5e-39 Smith-Waterman score: 861; 100.000% identity (100.000% similar) in 120 aa overlap (13-132:1-120) 10 20 30 40 50 60 KIAA16 KYCCNETEFQAVMQANLTASSEGYMHNNYTALLGVWIYGFFVLMLLVLDLLYYSAMNYDI :::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MQANLTASSEGYMHNNYTALLGVWIYGFFVLMLLVLDLLYYSAMNYDI 10 20 30 40 70 80 90 100 110 120 KIAA16 CKVYLARWGIQGRWMKQDPRRWGNPARAPRPGQRAPQPQPPPGPLPQAPQAVHTLRGDAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 CKVYLARWGIQGRWMKQDPRRWGNPARAPRPGQRAPQPQPPPGPLPQAPQAVHTLRGDAH 50 60 70 80 90 100 130 KIAA16 SPPLMTFQSSSA :::::::::::: gi|119 SPPLMTFQSSSA 110 120 >>gi|47224385|emb|CAG08635.1| unnamed protein product [T (194 aa) initn: 509 init1: 460 opt: 531 Z-score: 532.6 bits: 104.8 E(): 5.7e-21 Smith-Waterman score: 531; 55.639% identity (78.947% similar) in 133 aa overlap (1-132:68-194) 10 20 30 KIAA16 KYCCNETEFQAVMQANLTASSEGYMHNNYT ::::::::::.::: :::..:.:: ::::: gi|472 KGRYHFGFHCPRLSDNKTYMFCCHHNNTAFKYCCNETEFQTVMQLNLTTTSDGYAHNNYT 40 50 60 70 80 90 40 50 60 70 80 90 KIAA16 ALLGVWIYGFFVLMLLVLDLLYYSAMNYDICKVYLARWGIQGRWMKQDPRRWGNPARAPR ::.:::::::::..::.::.:::::.::..:.::: .::. :::.:. .:. :. gi|472 ALVGVWIYGFFVMVLLALDFLYYSAINYELCRVYLEKWGLGGRWLKKARSQWNRSM--PE 100 110 120 130 140 150 100 110 120 130 KIAA16 PGQRAPQPQPP-PGPLPQAPQAVHTLRGDAHSPPLMTFQSSSA .. : :: ::: : :.:::...:: :. ...:.: gi|472 ESETQAQAQPMVPGPY----QPRHSLRGESQSPTLLPYNTSTA 160 170 180 190 >>gi|92096267|gb|AAI15048.1| Zgc:136242 [Danio rerio] (203 aa) initn: 515 init1: 447 opt: 521 Z-score: 522.7 bits: 103.0 E(): 2.1e-20 Smith-Waterman score: 521; 55.147% identity (77.206% similar) in 136 aa overlap (1-132:68-202) 10 20 30 KIAA16 KYCCNETEFQAVMQANLTASSEGYMHNNYT ::::::::::.::: ::::.:.:. ::::: gi|920 KGRYHFGFHCPRLSDNKTYIFCCHHNNTAFKYCCNETEFQSVMQLNLTANSDGFAHNNYT 40 50 60 70 80 90 40 50 60 70 80 90 KIAA16 ALLGVWIYGFFVLMLLVLDLLYYSAMNYDICKVYLARWGIQGRWMKQDPRRWGNPARAPR ::.:::::::::..::.::.::::::::..:.::: .::. :::.:: .: . .. . gi|920 ALIGVWIYGFFVMVLLALDFLYYSAMNYELCRVYLEKWGLGGRWLKQARSQWHSTVQEGE 100 110 120 130 140 150 100 110 120 130 KIAA16 ----PGQRAPQPQPPPGPLPQAPQAVHTLRGDAHSPPLMTFQSSSA :: . : : . . :.::::..:: :..::.:.: gi|920 LNTGPGL-SQQQQLHLHHHHHHHHPRHSLRGDTQSPTLLSFQTSTAW 160 170 180 190 200 >>gi|55250984|emb|CAH68995.1| novel protein [Danio rerio (207 aa) initn: 517 init1: 449 opt: 519 Z-score: 520.6 bits: 102.6 E(): 2.7e-20 Smith-Waterman score: 519; 53.957% identity (75.540% similar) in 139 aa overlap (1-132:68-206) 10 20 30 KIAA16 KYCCNETEFQAVMQANLTASSEGYMHNNYT ::::::::::.::: ::::.:... ::::: gi|552 KGRYHFGFHCPRLSDNKTYIFCCHHNNTAFKYCCNETEFQSVMQLNLTANSDSFAHNNYT 40 50 60 70 80 90 40 50 60 70 80 90 KIAA16 ALLGVWIYGFFVLMLLVLDLLYYSAMNYDICKVYLARWGIQGRWMKQDPRRWGNPARAPR ::.:::::::::..::.::.::::::::..:.::: .::. :::.:: .: . .. . gi|552 ALIGVWIYGFFVMVLLALDFLYYSAMNYELCRVYLEKWGLGGRWLKQARSQWHSTVQEGE 100 110 120 130 140 150 100 110 120 130 KIAA16 ----PGQRAPQPQPPPGPLPQAPQ---AVHTLRGDAHSPPLMTFQSSSA :: : : : . . :.::::..:: :..::.:.: gi|552 LNTGPGLSQQQQQQQQLHLHHHHHHHHPRHSLRGDTQSPTLLSFQTSTAW 160 170 180 190 200 132 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Thu Mar 5 08:08:57 2009 done: Thu Mar 5 08:15:10 2009 Total Scan time: 1029.570 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]