hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08343533/chunk_1/iprscan-20080502-08343533.nocrc
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Query sequence: KIAA1640
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08647.1.fs BRE1 E3 ubiquitin ligase                       105.0    2.5e-29   1
PF08647.1.ls BRE1 E3 ubiquitin ligase                       107.0    5.1e-29   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08647.1.fs   1/1     578   677 ..     1   100 []   105.0  2.5e-29
PF08647.1.ls   1/1     578   677 ..     1   100 []   107.0  5.1e-29

Alignments of top-scoring domains:
PF08647.1.fs: domain 1 of 1, from 578 to 677: score 105.0, E = 2.5e-29
                   *->LqkELvklekafkelselalkKvaeltdlEqkitrLtaEKsKADqKY
                      Lq+E+vk++++++e+ ++++++++el+++Eqk++r++++++++++++
    KIAA1640   578    LQQEMVKVTQEQEEQLASLDASKKELHIMEQKKLRVESKIEQEKKEQ 624  

                   FaamrskDaldaEnKkLntqlsKsselieqLkdesfllEkelrrkieele
                   +++++++++ld+++KkLn++++K+++++e+L+++++++E+e++r+++++e
    KIAA1640   625 KEIEHHMKDLDNDLKKLNMLMNKNRCSSEELEQNNRVTENEFVRSLKASE 674  

                   Kql<-*
                   +++   
    KIAA1640   675 RET    677  

PF08647.1.ls: domain 1 of 1, from 578 to 677: score 107.0, E = 5.1e-29
                   *->LqkELvklekafkelselalkKvaeltdlEqkitrLtaEKsKADqKY
                      Lq+E+vk++++++e+ ++++++++el+++Eqk++r++++++++++++
    KIAA1640   578    LQQEMVKVTQEQEEQLASLDASKKELHIMEQKKLRVESKIEQEKKEQ 624  

                   FaamrskDaldaEnKkLntqlsKsselieqLkdesfllEkelrrkieele
                   +++++++++ld+++KkLn++++K+++++e+L+++++++E+e++r+++++e
    KIAA1640   625 KEIEHHMKDLDNDLKKLNMLMNKNRCSSEELEQNNRVTENEFVRSLKASE 674  

                   Kql<-*
                   +++   
    KIAA1640   675 RET    677  

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