hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08290652/chunk_1/iprscan-20080502-08290652.nocrc
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Query sequence: KIAA1637
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF03129.10.ls  Anticodon binding domain                  -0.1      0.041   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF03129.10.ls    1/1      99   193 ..     1   100 []    -0.1    0.041

Alignments of top-scoring domains:
PF03129.10.ls: domain 1 of 1, from 99 to 193: score -0.1, E = 0.041
                   *->qVvviPlgekdeqkeaekledyAkklaeeLraaG..irvelDdrrne
                      ++ vi +++           dyA+++ ++ r+ G  ++  + +  + 
    KIAA1637    99    DCSVIVVNK--------QTKDYAESVGRKVRDLGmvVDLIFLN-TEV 136  

                   riGkkfrdadliGiPyrlvvGekel..eegtVtvRdRdtgeqetvsleel
                   ++   + d  + G P+++v+  + + + + tV++   +  e+ +++ +++
    KIAA1637   137 SLSQALEDVSRGGSPFAIVITQQHQihRSCTVNIMFGTPQEHRNMPQADA 186  

                   veklkel<-*
                      + ++   
    KIAA1637   187 MVLVARN    193  

//