hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-08132020/chunk_1/iprscan-20080502-08132020.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1628 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00041.11.ls Fibronectin type III domain 279.9 4.7e-81 5 PF00041.11.fs Fibronectin type III domain 269.9 4.8e-78 5 PF07679.6.fs Immunoglobulin I-set domain 78.3 3.2e-22 1 PF07679.6.ls Immunoglobulin I-set domain 80.2 6.1e-21 1 PF00047.15.fs Immunoglobulin domain 36.2 3.5e-09 1 PF00047.15.ls Immunoglobulin domain 39.6 1e-08 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07679.6.fs 1/1 65 152 .. 1 96 [] 78.3 3.2e-22 PF07679.6.ls 1/1 65 152 .. 1 96 [] 80.2 6.1e-21 PF00047.15.ls 1/2 79 137 .. 1 65 [] 38.1 2.9e-08 PF00047.15.fs 1/1 79 137 .. 1 65 [] 36.2 3.5e-09 PF00041.11.fs 1/5 159 245 .. 1 84 [] 81.2 1.1e-22 PF00041.11.ls 1/5 159 245 .. 1 84 [] 83.2 7.5e-22 PF00041.11.fs 2/5 257 343 .. 1 84 [] 51.7 3.2e-14 PF00041.11.ls 2/5 257 343 .. 1 84 [] 53.7 5.5e-13 PF00041.11.fs 3/5 360 459 .. 1 84 [] 38.2 2.4e-10 PF00041.11.ls 3/5 360 459 .. 1 84 [] 40.2 6.5e-09 PF00041.11.fs 4/5 480 565 .. 1 84 [] 38.8 1.6e-10 PF00041.11.ls 4/5 480 565 .. 1 84 [] 40.8 4.4e-09 PF00041.11.ls 5/5 577 665 .. 1 84 [] 61.9 1.9e-15 PF00041.11.fs 5/5 577 665 .. 1 84 [] 59.9 1.4e-16 Alignments of top-scoring domains: PF07679.6.fs: domain 1 of 1, from 65 to 152: score 78.3, E = 3.2e-22 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P +tq p+ + + ++arf C+++G+P P W+++G pl++ KIAA1628 65 PAITQAPEALSRTRASTARFVCRASGEPRPALRWLHNGAPLRP---- 107 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< +v++ g g +L+I ++ D+G Y CvA+NsaG a a a+L V KIAA1628 108 --NGRVKVQG--GGGSLVITQIGLQDAGYYQCVAENSAGMACAAASLAV 152 -* KIAA1628 - - PF07679.6.ls: domain 1 of 1, from 65 to 152: score 80.2, E = 6.1e-21 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P +tq p+ + + ++arf C+++G+P P W+++G pl++ KIAA1628 65 PAITQAPEALSRTRASTARFVCRASGEPRPALRWLHNGAPLRP---- 107 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< +v++ g g +L+I ++ D+G Y CvA+NsaG a a a+L V KIAA1628 108 --NGRVKVQG--GGGSLVITQIGLQDAGYYQCVAENSAGMACAAASLAV 152 -* KIAA1628 - - PF00047.15.ls: domain 1 of 2, from 79 to 137: score 38.1, E = 2.9e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq ++++++C++ +g p + ++Wl+ng +l + +v++ +g+ KIAA1628 79 ASTARFVCRA--SGEPRPALRWLHNGApLRpNGRVKVQGGGGS---- 119 tsLtitnvtpeDggtYtCvv<-* L+it++ +D+g+Y Cv+ KIAA1628 120 --LVITQIGLQDAGYYQCVA 137 PF00047.15.fs: domain 1 of 1, from 79 to 137: score 36.2, E = 3.5e-09 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq ++++++C++ +g p + ++Wl+ng +l + +v++ +g+ KIAA1628 79 ASTARFVCRA--SGEPRPALRWLHNGApLRpNGRVKVQGGGGS---- 119 tsLtitnvtpeDggtYtCvv<-* L+it++ +D+g+Y Cv+ KIAA1628 120 --LVITQIGLQDAGYYQCVA 137 PF00041.11.fs: domain 1 of 5, from 159 to 245: score 81.2, E = 1.1e-22 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge. PsaPt++t+t+++s+ + + W++P+ + i g++++y q+++g+++ KIAA1628 159 PSAPTRVTATPLSSSAVLVAWERPEmHSEQIIGFSLHY-QKARGMDn 204 .wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + ++ v ++tt+ ++++L+P+t+Y+++V+A+++ G ++ S KIAA1628 205 vEYQFAVNNDTTELQVRDLEPNTDYEFYVVAYSQLGaSRTS 245 PF00041.11.ls: domain 1 of 5, from 159 to 245: score 83.2, E = 7.5e-22 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge. PsaPt++t+t+++s+ + + W++P+ + i g++++y q+++g+++ KIAA1628 159 PSAPTRVTATPLSSSAVLVAWERPEmHSEQIIGFSLHY-QKARGMDn 204 .wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + ++ v ++tt+ ++++L+P+t+Y+++V+A+++ G ++ S KIAA1628 205 vEYQFAVNNDTTELQVRDLEPNTDYEFYVVAYSQLGaSRTS 245 PF00041.11.fs: domain 2 of 5, from 257 to 343: score 51.7, E = 3.2e-14 *->PsaPtnltvtdvtstsltlsWspPt...gngpitgYevtyRqpkngg Psa +l+ ++ +++ +++ W p +++ ng + +Y+++y + KIAA1628 257 PSAAPQLSLSSPNPSDIRVAWLPLPpslSNGQVVKYKIEY-GLGKED 302 ewkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + ++ v g++t+ +l+ L+P+ Y vr+ A +++G G++S KIAA1628 303 QIFSTEVRGNETQLMLNSLQPNKVYRVRISAGTAAGfGAPS 343 PF00041.11.ls: domain 2 of 5, from 257 to 343: score 53.7, E = 5.5e-13 *->PsaPtnltvtdvtstsltlsWspPt...gngpitgYevtyRqpkngg Psa +l+ ++ +++ +++ W p +++ ng + +Y+++y + KIAA1628 257 PSAAPQLSLSSPNPSDIRVAWLPLPpslSNGQVVKYKIEY-GLGKED 302 ewkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + ++ v g++t+ +l+ L+P+ Y vr+ A +++G G++S KIAA1628 303 QIFSTEVRGNETQLMLNSLQPNKVYRVRISAGTAAGfGAPS 343 PF00041.11.fs: domain 3 of 5, from 360 to 459: score 38.2, E = 2.4e-10 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge.. P aP l+v + + sl++sW+pP+ i+gY++ +R +++ +e+ KIAA1628 360 PFAPAELKVQAKME-SLVVSWQPPPHPTQISGYKLYWR-EVGAEEea 404 ................wkeltvpgtttsytltgLkPgteYtvrVqAvngg ++++ +++++++ + + ++++ +y+lt L+Pg+ Y+v+++A n + KIAA1628 405 ngdrlpggrgdqawdvGPVRLKKKVK-QYELTQLVPGRLYEVKLVAFNKH 453 G.GpeS<-* +G KIAA1628 454 EdGYAA 459 PF00041.11.ls: domain 3 of 5, from 360 to 459: score 40.2, E = 6.5e-09 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge.. P aP l+v + + sl++sW+pP+ i+gY++ +R +++ +e+ KIAA1628 360 PFAPAELKVQAKME-SLVVSWQPPPHPTQISGYKLYWR-EVGAEEea 404 ................wkeltvpgtttsytltgLkPgteYtvrVqAvngg ++++ +++++++ + + ++++ +y+lt L+Pg+ Y+v+++A n + KIAA1628 405 ngdrlpggrgdqawdvGPVRLKKKVK-QYELTQLVPGRLYEVKLVAFNKH 453 G.GpeS<-* +G KIAA1628 454 EdGYAA 459 PF00041.11.fs: domain 4 of 5, from 480 to 565: score 38.8, E = 1.6e-10 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge. P +P +++++++sts+ l+W++P+ +i +Y+v+ +p g + KIAA1628 480 PLPPAHVHAESNSSTSIWLRWKKPDfTTVKIVNYTVRF-SPW-GLRn 524 ...wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + ++ +t +g + gLkP t+Y++ Vq++ + +Gp+ KIAA1628 525 aslVTYYTSSGED--ILIGGLKPFTKYEFAVQSHGVDMdGPFG 565 PF00041.11.ls: domain 4 of 5, from 480 to 565: score 40.8, E = 4.4e-09 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge. P +P +++++++sts+ l+W++P+ +i +Y+v+ +p g + KIAA1628 480 PLPPAHVHAESNSSTSIWLRWKKPDfTTVKIVNYTVRF-SPW-GLRn 524 ...wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + ++ +t +g + gLkP t+Y++ Vq++ + +Gp+ KIAA1628 525 aslVTYYTSSGED--ILIGGLKPFTKYEFAVQSHGVDMdGPFG 565 PF00041.11.ls: domain 5 of 5, from 577 to 665: score 61.9, E = 1.9e-15 *->P.saPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge P+ +P++l+ +++t+++++l+W pPt++ng+i Y + + +++n+ + KIAA1628 577 PsTPPSDLRLSPLTPSTVRLHWCPPTePNGEIVEYLI-L-YSSNHTQ 621 ....wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++++w+ lt+ g+ s++++gL+ +t+Y ++ A++++G+Gp+S KIAA1628 622 pehqWTLLTTQGNIFSAEVHGLESDTRYFFKMGARTEVGpGPFS 665 PF00041.11.fs: domain 5 of 5, from 577 to 665: score 59.9, E = 1.4e-16 *->P.saPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge P+ +P++l+ +++t+++++l+W pPt++ng+i Y + + +++n+ + KIAA1628 577 PsTPPSDLRLSPLTPSTVRLHWCPPTePNGEIVEYLI-L-YSSNHTQ 621 ....wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++++w+ lt+ g+ s++++gL+ +t+Y ++ A++++G+Gp+S KIAA1628 622 pehqWTLLTTQGNIFSAEVHGLESDTRYFFKMGARTEVGpGPFS 665 //