hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08100085/chunk_1/iprscan-20080502-08100085.nocrc
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Query sequence: KIAA1626
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00621.11.fs RhoGEF domain                                  123.7    2.2e-36   1
PF00621.11.ls RhoGEF domain                                  125.5    1.4e-34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00621.11.fs   1/1     325   507 ..     1   207 []   123.7  2.2e-36
PF00621.11.ls   1/1     325   507 ..     1   207 []   125.5  1.4e-34

Alignments of top-scoring domains:
PF00621.11.fs: domain 1 of 1, from 325 to 507: score 123.7, E = 2.2e-36
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
                      +l +++++E  Yv++L  ++++y+ pL e  + + + L++++ + +F
    KIAA1626   325    ILGSIVQSEGSYVESLKRILQDYRNPLME--MEP-KALSARKCQVVF 368  

                   sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlel.
                   + + +i+  h+ F + +L  r+ ++           +s++ +GdlF ++ 
    KIAA1626   369 FRVKEILHCHSMFQI-ALSSRVAEW-----------DSTEKIGDLFVASf 406  

                   .kaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgA
                   +k+  l+vY  Y++n+ +A+ +++k   + + p+F efl++++  s  + 
    KIAA1626   407 sKSMVLDVYSDYVNNFTSAMSIIKK--ACLTKPAFLEFLKRRQVCSP-D- 452  

                   kddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkal
                        ++tL  L++kP+qR +  +LLL++ Lk tp   +++++ +L++al
    KIAA1626   453 -----RVTLYGLMVKPIQRFPQFILLLQDMLKNTPR--GHPDRLSLQLAL 495  

                   dalqdlaksiNe<-*
                     l++la+ +Ne   
    KIAA1626   496 TELETLAEKLNE    507  

PF00621.11.ls: domain 1 of 1, from 325 to 507: score 125.5, E = 1.4e-34
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
                      +l +++++E  Yv++L  ++++y+ pL e  + + + L++++ + +F
    KIAA1626   325    ILGSIVQSEGSYVESLKRILQDYRNPLME--MEP-KALSARKCQVVF 368  

                   sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlel.
                   + + +i+  h+ F + +L  r+ ++           +s++ +GdlF ++ 
    KIAA1626   369 FRVKEILHCHSMFQI-ALSSRVAEW-----------DSTEKIGDLFVASf 406  

                   .kaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgA
                   +k+  l+vY  Y++n+ +A+ +++k   + + p+F efl++++  s  + 
    KIAA1626   407 sKSMVLDVYSDYVNNFTSAMSIIKK--ACLTKPAFLEFLKRRQVCSP-D- 452  

                   kddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkal
                        ++tL  L++kP+qR +  +LLL++ Lk tp   +++++ +L++al
    KIAA1626   453 -----RVTLYGLMVKPIQRFPQFILLLQDMLKNTPR--GHPDRLSLQLAL 495  

                   dalqdlaksiNe<-*
                     l++la+ +Ne   
    KIAA1626   496 TELETLAEKLNE    507  

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