hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08050325/chunk_1/iprscan-20080502-08050325.nocrc
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Query sequence: KIAA1623
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04547.3.ls Protein of unknown function, DUF590            219.4    7.2e-63   1
PF04547.3.fs Protein of unknown function, DUF590            217.8    2.2e-62   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04547.3.fs   1/1     475   884 ..     1   292 []   217.8  2.2e-62
PF04547.3.ls   1/1     475   884 ..     1   292 []   219.4  7.2e-63

Alignments of top-scoring domains:
PF04547.3.fs: domain 1 of 1, from 475 to 884: score 217.8, E = 2.2e-62
                   *->aiiligkQliwNnimEiglPylvklfrklk.................
                      a++li++Q + +n +E++ P l ++    +++ + +   +  +   +
    KIAA1623   475    ATLLITRQFL-QNVREVLQPHLYRRLG--Rgelglravwelarallg 518  

                   ..................................................
                     + +++ +++ +++ ++++++++++++++  +++ + ++++++    ++
    KIAA1623   519 llslrrpaprrlepqadegggggsggggrrclsggcgapeeeeeaalver 568  

                   ..................................................
                   ++ +++++++++++++++++++++++++++++++++++++++  + + + 
    KIAA1623   569 rrageggeegdgppggkeededdeeeedeeeeedeeegeegglldcglrl 618  

                   ..................................................
                   ++ +  +++ ++++++++++   ++++++  +++ +++  +  +++++ +
    KIAA1623   619 kkvsfaergagrrrpgpspealleegsptmvekglepgvftlaeeddeae 668  

                   ..............................................aelk
                   + +++++++++    ++ ++++++++++++++++++++++++++++   +
    KIAA1623   669 gapgspereppailfrraggegrdqgpdggpdpepgsnsdstrrqrRQNR 718  

                   rkpkaedhkqeipiekatldsaryeqweydyslqpeeydgrvdLfddYLE
                   + + + +++         ++s+   q e+++ +   +y++   +f dY E
    KIAA1623   719 SSWIDPPEE---------EHSPQLTQAELESCMK--KYED---TFQDYQE 754  

                   mvLQFGFVtlFsaaFPLAPlfALLNNviEiRlDAyKlvtvlrREYFPfpi
                   m++QFG+V+lFs+aFPLA+l+AL+NN+iEiR+DA+Kl+t l+R   Pf++
    KIAA1623   755 MFVQFGYVVLFSSAFPLAALCALVNNLIEIRSDAFKLCTGLQR---PFGQ 801  

                   RDKPSVNTQaadIGiWqniLellsvlaVitNafliaftsdCfIPRlVYky
                   R        +++IG Wq ++e ++vla+++N+ li+  ++          
    KIAA1623   802 R--------VESIGQWQKVMEAMGVLAIVVNCYLIGQCGQ---------- 833  

                   syskngtLkGYvNhtLSfFnvsDfkeGtplsasvfladstyCrytdyRlp
                                          ++                      Rl 
    KIAA1623   834 -----------------------LQ----------------------RLF 838  

                   PsdpePYelskqYWhilaarLafvVvfEHlvlgLkfllswvIPdvPawva
                   P+            ++  a++++vVv+EH+ l+Lk+l++ +IPd+P wva
    KIAA1623   839 PW------------LSPEAAIVSVVVLEHFALLLKYLIHVAIPDIPGWVA 876  

                   dqirrekf<-*
                    ++++ ++   
    KIAA1623   877 EEMAKLEY    884  

PF04547.3.ls: domain 1 of 1, from 475 to 884: score 219.4, E = 7.2e-63
                   *->aiiligkQliwNnimEiglPylvklfrklk.................
                      a++li++Q + +n +E++ P l ++    +++ + +   +  +   +
    KIAA1623   475    ATLLITRQFL-QNVREVLQPHLYRRLG--Rgelglravwelarallg 518  

                   ..................................................
                     + +++ +++ +++ ++++++++++++++  +++ + ++++++    ++
    KIAA1623   519 llslrrpaprrlepqadegggggsggggrrclsggcgapeeeeeaalver 568  

                   ..................................................
                   ++ +++++++++++++++++++++++++++++++++++++++  + + + 
    KIAA1623   569 rrageggeegdgppggkeededdeeeedeeeeedeeegeegglldcglrl 618  

                   ..................................................
                   ++ +  +++ ++++++++++   ++++++  +++ +++  +  +++++ +
    KIAA1623   619 kkvsfaergagrrrpgpspealleegsptmvekglepgvftlaeeddeae 668  

                   ..............................................aelk
                   + +++++++++    ++ ++++++++++++++++++++++++++++   +
    KIAA1623   669 gapgspereppailfrraggegrdqgpdggpdpepgsnsdstrrqrRQNR 718  

                   rkpkaedhkqeipiekatldsaryeqweydyslqpeeydgrvdLfddYLE
                   + + + +++         ++s+   q e+++ +   +y++   +f dY E
    KIAA1623   719 SSWIDPPEE---------EHSPQLTQAELESCMK--KYED---TFQDYQE 754  

                   mvLQFGFVtlFsaaFPLAPlfALLNNviEiRlDAyKlvtvlrREYFPfpi
                   m++QFG+V+lFs+aFPLA+l+AL+NN+iEiR+DA+Kl+t l+R   Pf++
    KIAA1623   755 MFVQFGYVVLFSSAFPLAALCALVNNLIEIRSDAFKLCTGLQR---PFGQ 801  

                   RDKPSVNTQaadIGiWqniLellsvlaVitNafliaftsdCfIPRlVYky
                   R        +++IG Wq ++e ++vla+++N+ li+  ++          
    KIAA1623   802 R--------VESIGQWQKVMEAMGVLAIVVNCYLIGQCGQ---------- 833  

                   syskngtLkGYvNhtLSfFnvsDfkeGtplsasvfladstyCrytdyRlp
                                          ++                      Rl 
    KIAA1623   834 -----------------------LQ----------------------RLF 838  

                   PsdpePYelskqYWhilaarLafvVvfEHlvlgLkfllswvIPdvPawva
                   P+            ++  a++++vVv+EH+ l+Lk+l++ +IPd+P wva
    KIAA1623   839 PW------------LSPEAAIVSVVVLEHFALLLKYLIHVAIPDIPGWVA 876  

                   dqirrekf<-*
                    ++++ ++   
    KIAA1623   877 EEMAKLEY    884  

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