hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08013689/chunk_1/iprscan-20080502-08013689.nocrc
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Query sequence: KIAA1621
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00112                                                 412.2     3e-119   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00112    1/5     166   251 ..     1   121 []    79.9  3.1e-19
SM00112    2/5     275   356 ..     1   121 []    92.9  3.8e-23
SM00112    3/5     379   460 ..     1   121 []    82.0  7.2e-20
SM00112    4/5     484   570 ..     1   121 []   106.8  2.5e-27
SM00112    5/5     600   681 ..     1   121 []    50.6  2.1e-10

Alignments of top-scoring domains:
SM00112: domain 1 of 5, from 166 to 251: score 79.9, E = 3.1e-19
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                       +A D+D g   +N          Y i+++++ +    + + G ++p
    KIAA1621   166    NHALDLDVG---SNNV------QNYKISPsshfrVLIHEFRDGRKYP 203  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          ++++ k+LDREe          ++ +Lt +A DgG+pp     
    KIAA1621   204 -------ELVLDKELDREEE---------PQLRLTLTALDGGSPP----- 232  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             +s+ta+v+++V+D+NDNaP   
    KIAA1621   233 ----------RSGTAQVRIEVVDINDNAP    251  

SM00112: domain 2 of 5, from 275 to 356: score 92.9, E = 3.8e-23
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.......lFsIdpetGtn
                      vsA+D+D g    Ngk      ++Y++ +++++ ++  +++p tG  
    KIAA1621   275    VSARDLDGG---ANGK------ISYTLFQpsediskTLEVNPMTG-- 310  

                   gpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgd
                            +++++k+ D+E            +Y+++++AtDgGg     
    KIAA1621   311 ---------EVRLRKQVDFEMV---------TSYEVRIKATDGGG----- 337  

                   ssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                               ls+ +t+  +V+DvNDN+P   
    KIAA1621   338 ------------LSGKCTLLLQVVDVNDNPP    356  

SM00112: domain 3 of 5, from 379 to 460: score 82.0, E = 7.2e-20
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                      +s++D+Dsg   +Ngk         si ++ +F + p+  +      
    KIAA1621   379    FSVSDPDSG---NNGK------TISSIQEdlPFLLKPSVKN------ 410  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                     +++++t ++LDRE++         +eY++t ++tD+G+p+        
    KIAA1621   411 --FYTLVTERALDREAR---------AEYNITLTVTDMGTPR-------- 441  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          l ++  +tv++ DvNDNaP   
    KIAA1621   442 -------LKTEHNITVQISDVNDNAP    460  

SM00112: domain 4 of 5, from 484 to 570: score 106.8, E = 2.5e-27
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..........lFsIdpet
                      vsAtD+Dsg    N++      vtYs+l++++++ +  +l sI++++
    KIAA1621   484    VSATDRDSG---INAQ------VTYSLLPpqdphlplasLVSINADN 521  

                   GtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpp
                   G            ++++++LD+E+           e++++v AtD+G+p 
    KIAA1621   522 GH-----------LFALRSLDYEAL---------REFEFRVSATDRGSPA 551  

                   pgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                  lss+a v+v VlD NDN P   
    KIAA1621   552 ---------------LSSEALVRVLVLDANDNSP    570  

SM00112: domain 5 of 5, from 600 to 681: score 50.6, E = 2.1e-10
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      v+A+D Dsg   +N++      ++Y++l  ++++lF + +++G    
    KIAA1621   600    VVAVDGDSG---QNAW------LSYQLLKatepgLFGVWAHNG---- 633  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          +++t++ L   +          ++++L+v ++D+G+pp     
    KIAA1621   634 -------EVRTARLLSERDA---------AKHRLVVLVKDNGEPP----- 662  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                              s+tat++v ++D    +    
    KIAA1621   663 ----------CSATATLHVLLVDGFSQPF    681  

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