hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-08013689/chunk_1/iprscan-20080502-08013689.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1621 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00028.8.ls Cadherin domain 275.9 7.5e-80 5 PF00028.8.fs Cadherin domain 272.7 6.9e-79 6 PF08266.2.fs Cadherin-like 185.0 9.5e-54 1 PF08266.2.ls Cadherin-like 187.0 4.2e-53 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08266.2.fs 1/1 40 123 .. 1 84 [] 185.0 9.5e-54 PF08266.2.ls 1/1 40 123 .. 1 84 [] 187.0 4.2e-53 PF00028.8.ls 1/5 149 244 .. 1 107 [] 32.3 1.5e-06 PF00028.8.fs 2/6 209 244 .. 63 107 .] 32.2 1.3e-08 PF00028.8.fs 3/6 258 349 .. 1 107 [] 80.8 1.5e-22 PF00028.8.ls 2/5 258 349 .. 1 107 [] 82.6 1.1e-21 PF00028.8.fs 4/6 363 453 .. 1 107 [] 45.1 2.5e-12 PF00028.8.ls 3/5 363 453 .. 1 107 [] 47.0 6e-11 PF00028.8.fs 5/6 467 563 .. 1 107 [] 77.9 1e-21 PF00028.8.ls 4/5 467 563 .. 1 107 [] 79.8 8.1e-21 PF00028.8.ls 5/5 579 674 .. 1 107 [] 34.2 4.3e-07 PF00028.8.fs 6/6 591 674 .. 9 107 .] 34.7 2.5e-09 Alignments of top-scoring domains: PF08266.2.fs: domain 1 of 1, from 40 to 123: score 185.0, E = 9.5e-54 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF + +YSV EEterGsfV+Nl KDLGL+++e ++R+aRi+S+gnkq++ KIAA1621 40 ELGSYSVVEETERGSFVANLGKDLGLGLTEMSTRKARIISQGNKQHL 86 qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* ql ++tGdLl+nE++DREeLCg++epC+Lh++vl+En KIAA1621 87 QLKAQTGDLLINEKLDREELCGPTEPCILHFQVLMEN 123 PF08266.2.ls: domain 1 of 1, from 40 to 123: score 187.0, E = 4.2e-53 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF + +YSV EEterGsfV+Nl KDLGL+++e ++R+aRi+S+gnkq++ KIAA1621 40 ELGSYSVVEETERGSFVANLGKDLGLGLTEMSTRKARIISQGNKQHL 86 qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* ql ++tGdLl+nE++DREeLCg++epC+Lh++vl+En KIAA1621 87 QLKAQTGDLLINEKLDREELCGPTEPCILHFQVLMEN 123 PF00028.8.ls: domain 1 of 5, from 149 to 244: score 32.3, E = 1.5e-06 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp....g +pEn+p Gte +A D D g N Y+i++ + + KIAA1621 149 MILKIPENSPLGTEFPLNHALDLD--VGSNNVQNYKISPSSHfrvlI 193 gwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasggg + Fr ++ + + + k+LDREe ++ +Lt+ A D+ g+ KIAA1621 194 HEFRDGRKYPE----LVLDKELDREEE--PQLRLTLTALDG-------GS 230 pplsstatvtitVl<-* pp+s+ta+v+i+V KIAA1621 231 PPRSGTAQVRIEVV 244 PF00028.8.fs: domain 2 of 6, from 209 to 244: score 32.2, E = 1.3e-08 *->kpLDREeifngeYeLtveAtDadpllasgggpplsstatvtitVl<- k+LDREe ++ +Lt+ A D+ g+pp+s+ta+v+i+V KIAA1621 209 KELDREEE--PQLRLTLTALDG-------GSPPRSGTAQVRIEVV 244 * KIAA1621 - - PF00028.8.fs: domain 3 of 6, from 258 to 349: score 80.8, E = 1.5e-22 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..ggw y +++pEn+p G+ v+tv A+D D g+Ng+i+Y + +++++ +++ KIAA1621 258 YKVQIPENSPLGSLVATVSARDLD--GGANGKISYTLFQPSEdiSKT 302 FrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggpp +++p tG+ ++++k++D E Ye+ ++AtD++ + KIAA1621 303 LEVNPMTGE----VRLRKQVDFEMV--TSYEVRIKATDGG---------G 337 lsstatvtitVl<-* ls+ +t+ +V KIAA1621 338 LSGKCTLLLQVV 349 PF00028.8.ls: domain 2 of 5, from 258 to 349: score 82.6, E = 1.1e-21 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..ggw y +++pEn+p G+ v+tv A+D D g+Ng+i+Y + +++++ +++ KIAA1621 258 YKVQIPENSPLGSLVATVSARDLD--GGANGKISYTLFQPSEdiSKT 302 FrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggpp +++p tG+ ++++k++D E Ye+ ++AtD++ + KIAA1621 303 LEVNPMTGE----VRLRKQVDFEMV--TSYEVRIKATDGG---------G 337 lsstatvtitVl<-* ls+ +t+ +V KIAA1621 338 LSGKCTLLLQVV 349 PF00028.8.fs: domain 4 of 6, from 363 to 453: score 45.1, E = 2.5e-12 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + +pEn+p v+++ ++D+D +g Ng+ si ++ p F KIAA1621 363 LTSPIPENSP-EIVVAVFSVSDPD--SGNNGKTISSIQEDLP---FL 403 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls + p + n ++ t + LDRE++ eY++t+ +tD+ g+p l KIAA1621 404 LKP-SVKNFYTLVTERALDREAR--AEYNITLTVTDM-------GTPRLK 443 statvtitVl<-* ++ +t+++ KIAA1621 444 TEHNITVQIS 453 PF00028.8.ls: domain 3 of 5, from 363 to 453: score 47.0, E = 6e-11 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + +pEn+p v+++ ++D+D +g Ng+ si ++ p F KIAA1621 363 LTSPIPENSP-EIVVAVFSVSDPD--SGNNGKTISSIQEDLP---FL 403 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls + p + n ++ t + LDRE++ eY++t+ +tD+ g+p l KIAA1621 404 LKP-SVKNFYTLVTERALDREAR--AEYNITLTVTDM-------GTPRLK 443 statvtitVl<-* ++ +t+++ KIAA1621 444 TEHNITVQIS 453 PF00028.8.fs: domain 5 of 6, from 467 to 563: score 77.9, E = 1e-21 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... y+ v+En ++ ++++v AtD+D +g N++++Ys+l++ ++ + KIAA1621 467 YTLFVRENNSPALHIGSVSATDRD--SGINAQVTYSLLPPQDphlpl 511 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg + +I+ d+G ++ ++LD+E+ +e+e+ v+AtD+ g KIAA1621 512 ASLVSINADNGH----LFALRSLDYEAL--REFEFRVSATDR-------G 548 gpplsstatvtitVl<-* +p+lss+a v++ Vl KIAA1621 549 SPALSSEALVRVLVL 563 PF00028.8.ls: domain 4 of 5, from 467 to 563: score 79.8, E = 8.1e-21 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... y+ v+En ++ ++++v AtD+D +g N++++Ys+l++ ++ + KIAA1621 467 YTLFVRENNSPALHIGSVSATDRD--SGINAQVTYSLLPPQDphlpl 511 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg + +I+ d+G ++ ++LD+E+ +e+e+ v+AtD+ g KIAA1621 512 ASLVSINADNGH----LFALRSLDYEAL--REFEFRVSATDR-------G 548 gpplsstatvtitVl<-* +p+lss+a v++ Vl KIAA1621 549 SPALSSEALVRVLVL 563 PF00028.8.ls: domain 5 of 5, from 579 to 674: score 34.2, E = 4.3e-07 *->ysasvpEnap....vGtevltvtAtDaDdPlgpNgrirYsilggnpg sa + E +p+ ++G v+ v A+D D +g+N+ ++Y +l+ ++ KIAA1621 579 GSAPCTELVPraaePGYLVTKVVAVDGD--SGQNAWLSYQLLKATEP 623 gwFrIdpdtGdnegiisttkpLDREeif.ngeYeLtveAtDadpllasgg g F + ++G+ ++t++ L ++ +++L+v+++D+ g KIAA1621 624 GLFGVWAHNGE----VRTARLLSE---RdAAKHRLVVLVKDN-------G 659 gpplsstatvtitVl<-* +pp s+tat+++ + KIAA1621 660 EPPCSATATLHVLLV 674 PF00028.8.fs: domain 6 of 6, from 591 to 674: score 34.7, E = 2.5e-09 *->apvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFrIdpdtGdn a +G v+ v A+D D +g+N+ ++Y +l+ ++g F + ++G+ KIAA1621 591 AEPGYLVTKVVAVDGD--SGQNAWLSYQLLKATEPGLFGVWAHNGE- 634 egiisttkpLDREeif.ngeYeLtveAtDadpllasgggpplsstatvti ++t++ L ++ +++L+v+++D+ g+pp s+tat+++ KIAA1621 635 ---VRTARLLSE---RdAAKHRLVVLVKDN-------GEPPCSATATLHV 671 tVl<-* + KIAA1621 672 LLV 674 //