hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07545781/chunk_1/iprscan-20080502-07545781.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1617
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00561                                                 628.2   2.7e-184   4
SM00454                                                  39.1    5.9e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00561    1/4      54   154 ..     1   121 []   179.5  3.3e-49
SM00561    2/4     162   266 ..     1   121 []   146.6  2.5e-39
SM00561    3/4     276   382 ..     1   121 []   132.8  3.7e-35
SM00561    4/4     390   487 ..     1   121 []   169.3  3.7e-46
SM00454    1/1     831   897 ..     1    67 []    39.1  5.9e-07

Alignments of top-scoring domains:
SM00561: domain 1 of 4, from 54 to 154: score 179.5, E = 3.3e-49
                   *->fdWeeyLikeetgaraaPvelFdkqpvdsppngFkvGMKLEavDpDy
                      f+W eyL  eetga+aaP++ F k++  s +++F++GMKLE++++  
    KIAA1617    54    FNWGEYL--EETGASAAPHTSF-KHVEISIQSNFQPGMKLEVANK-- 95   

                   DcrnpslicvATVveVkGrgrlllhfddDyPELPvdGwdderVhesydfW
                     +np +++vAT+++++G+ +lll+++        ++ +d+r     dfW
    KIAA1617    96 --NNPDTYWVATIITTCGQ-LLLLRYC--------GYGEDRR----ADFW 130  

                   cdadSpdIfPvGWCeknghpLqpP<-*
                   cd+  +d++PvGWC++n+++L+pP   
    KIAA1617   131 CDVVIADLHPVGWCTQNNKVLMPP    154  

SM00561: domain 2 of 4, from 162 to 266: score 146.6, E = 2.5e-39
                   *->fdWeeyLikeetgaraaPvelF.dkqpvdsppngFkvGMKLEavDpD
                      +dW e+Li+ +tg+r+aP +l +++ +++ p++ ++vG  +E++D  
    KIAA1617   162    TDWTEFLIRDLTGSRTAPANLLeGPLRGKGPIDLITVGSLIELQDS- 207  

                   yDcrnpslicvATVveVkGrgrlllhfddDyPELPvdGwdderVhesydf
                      +np+++++++V+e++G+ rl+l++          G++d+   esyd+
    KIAA1617   208 ---QNPFQYWIVSVIENVGG-RLRLRYV---------GLEDT---ESYDQ 241  

                   WcdadSpdIfPvGWCeknghpLqpP<-*
                   W+ ++++ ++PvGWC++n++++ pP   
    KIAA1617   242 WLFYLDYRLRPVGWCQENKYRMDPP    266  

SM00561: domain 3 of 4, from 276 to 382: score 132.8, E = 3.7e-35
                   *->fdWeeyL..ikeetgaraaPvelFdkqpvdsppngFkvGMKLEavDp
                      ++W++ L+++ ++    ++P+e F k+++d +++ F+vGMKLE+v++
    KIAA1617   276    SEWKCTLekSLIDAAKFPLPMEVF-KDHADLRSHFFTVGMKLETVNM 321  

                   DyDcrnpslicvATVveVkGrgrlllhfddDyPELPvdGwdderVhesyd
                       ++p+ i +A+V++V+  +++++++d        d +++    ++  
    KIAA1617   322 ----CEPFYISPASVTKVFNNHFFQVTID--------DLRPEP---SKLS 356  

                   fWcdadSpdIfPvGWCeknghpLqpP<-*
                   + c+adS  I Pv+WC kng +L+pP   
    KIAA1617   357 MLCHADSLGILPVQWCLKNGVSLTPP    382  

SM00561: domain 4 of 4, from 390 to 487: score 169.3, E = 3.7e-46
                   *->fdWeeyLikeetgaraaPvelFdkqpvdsppngFkvGMKLEavDpDy
                      fdW +y+  +++ga+ aP+ +F   +++s++ gF+ +MKLEav+p  
    KIAA1617   390    FDWADYH--KQHGAQEAPPFCF---RNTSFSRGFTKNMKLEAVNP-- 429  

                   DcrnpslicvATVveVkGrgrlllhfddDyPELPvdGwdderVhesydfW
                     rnp + cvA+Vv+VkGr +++lh++         G+ +    ++++ +
    KIAA1617   430 --RNPGELCVASVVSVKGR-LMWLHLE---------GLQT----PVPEVI 463  

                   cdadSpdIfPvGWCeknghpLqpP<-*
                   +d++S+dIfPvGWCe+n++pL++P   
    KIAA1617   464 VDVESMDIFPVGWCEANSYPLTAP    487  

SM00454: domain 1 of 1, from 831 to 897: score 39.1, E = 5.9e-07
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                      + +w++ +V ++++  +++  a++F+++ idg++llllt +   +e+
    KIAA1617   831    PLeWTVTDVVRFIKLTDCAPLAKIFQEQDIDGQALLLLT-LPTVQEC 876  

                   GitllGhRkkIlsaiqklkeq<-*
                   +  +lG+  k+++ i+  k     
    KIAA1617   877 MELKLGPAIKLCHQIERVKVA    897  

//