# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj13890.fasta.huge -Q ../query/KIAA1617.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1617, 904 aa vs ./tmplib.25089 library 1986601 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 7.2853+/-0.00663; mu= 4.8595+/- 0.449 mean_var=166.0965+/-40.076, 0's: 0 Z-trim: 3 B-trim: 27 in 1/39 Lambda= 0.099516 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0681 ( 538 res) hk02748 ( 538) 445 76.3 1e-14 KIAA1798 ( 781 res) fj20547 ( 781) 363 64.7 4.8e-11 >>KIAA0681 ( 538 res) hk02748 (538 aa) initn: 415 init1: 172 opt: 445 Z-score: 356.0 bits: 76.3 E(): 1e-14 Smith-Waterman score: 579; 31.532% identity (56.532% similar) in 444 aa overlap (177-609:5-423) 150 160 170 180 190 200 KIAA16 NNKVLMPPDAIKEKYTDWTEFLIRDLTGSRTAPANLLEGPLRGKGPIDLITVGSLIELQD :::..:.. . . .: .: : KIAA06 QKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGID 10 20 30 210 220 230 240 250 260 KIAA16 SQNPFQYWIVSVIENVGGRLRLRYVGLEDTESYDQWLFYLDYRLRPVGWCQENKYRMDPP :.: .:.:..: : : ::::.. : .: .: :. . ..:.:: ... ....:: KIAA06 PQHPSMYFILTVAEVCGYRLRLHFDGY--SECHDFWVNANSPDIHPAGWFEKTGHKLQPP 40 50 60 70 80 90 270 280 290 300 310 320 KIAA16 SEIYPLKMASEWKCTLEKSLIDAAKFPLPMEVFKDHADLRSHFFTVGMKLETVNMCEPFY . : . : :. :... .:: : . : ..:. : ::::::.:. .: KIAA06 KG-YKEEEFS-WSQYLRSTRAQAA--PKHLFVSQSHSP-PPLGFQVGMKLEAVDRMNPSL 100 110 120 130 140 330 340 350 360 370 380 KIAA16 ISPASVTKVFNNHFFQVTIDDLRPEPSKLSMLCHADSLGILPVQWCLKNGVSLTPPKGYS . :::: : ...:. : .:. . .. : .: : :: :: :.: ::::. : KIAA06 VCVASVTDVVDSRFL-VHFDNW---DDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYP 150 160 170 180 190 200 390 400 410 420 430 440 KIAA16 GQD-FDWADYHKQHGAQEAPPFCFRNTSFSRGFTKNMKLEAVNPRNPGELCVASVVSVKG : : : : .. ::. .: . :. . ..: :::::::. :::. . :::: .:. KIAA06 DPDNFCWEKYLEETGASAVPTWAFK-VRPPHSFLVNMKLEAVDRRNPALIRVASVEDVED 210 220 230 240 250 260 450 460 470 480 490 500 KIAA16 RLMWLHLEGLQTPVPEVIVDVESMDIFPVGWCEANSYPLTAPHKTVSQKKRKIAVVQP-- . . .:..: . . .:.. :: :.::: ...:: : .. . . : KIAA06 HRIKIHFDGWSHGY-DFWIDADHPDIHPAGWCSKTGHPLQPPLGPREPSSASPGGCPPLS 270 280 290 300 310 320 510 520 530 540 550 KIAA16 EKQLPPTVPVK-KIPHDLCLFPHLDTTGTVNGKYCCPQLFINHRCFSGPYL---NKGRI- ..:: : : .. : : : : .: :.:: : :.:.:: : :..:. KIAA06 YRSLPHTRTSKYSFHHRKCPTPGCDGSGHVTGK------FTAHHCLSGCPLAERNQSRLK 330 340 350 360 370 560 570 580 590 600 610 KIAA16 AELPQSVGPGKCVLVLKEVLSMIINAAYKP---GRVLRELQLVEDPHWNFQEETLKAKYR ::: .: . .. :. :: . . :: ::. : . . :. .:: : KIAA06 AELSDSEASAR-----KKNLSGF-SPRKKPRHHGRIGRPPKYRKIPQEDFQTLTPDVVHQ 380 390 400 410 420 620 630 640 650 660 670 KIAA16 GKTYRAVVKIVRTSDQVANFCRRVCAKLECCPNLFSPVLISENCPENCSIHTKTKYTYYY KIAA06 SLFMSALSAHPDRSLSVCWEQHCKLLPGVAGISASTVAKWTIDEVFGFVQTLTGCEDQAR 430 440 450 460 470 480 >>KIAA1798 ( 781 res) fj20547 (781 aa) initn: 348 init1: 169 opt: 363 Z-score: 290.2 bits: 64.7 E(): 4.8e-11 Smith-Waterman score: 518; 29.730% identity (56.265% similar) in 407 aa overlap (56-458:235-607) 30 40 50 60 70 80 KIAA16 SPLEKCLGSANGNGDLDSEEGSSLEETGFNWGEYLEETGASAAPHTSFK-HVEISIQSN- :. :::: : :.: :: : . ..: KIAA17 RGSQRARRKRRGDSAVLKQGLPPKGKKAWCWASYLEEEKAVAVPAKLFKEHQSFPYNKNG 210 220 230 240 250 260 90 100 110 120 130 140 KIAA16 FQPGMKLEVANKNNPDTYWVATIITTCGQLLLLRYCGYGEDRRADFWCDVVIADLHPVGW :. ::::: .. .. ..: : :. .:: . :.. ::.. ::: .. :.::::: KIAA17 FKVGMKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSDCY--DFWVNADALDIHPVGW 270 280 290 300 310 320 150 160 170 180 190 200 KIAA16 CTQNNKVLMPPDAIKEKYTDWTEFLIRDLTGSRTAPANLLEGPLRGKGPIDLITVGSLIE : .... : :: . ::. .: .: ...:: .:.:. : . :: .: KIAA17 CEKTGHKLHPPKGYKEEEFNWQTYL--KTCKAQAAPKSLFENQNITVIPSGF-RVGMKLE 330 340 350 360 370 210 220 230 240 250 260 KIAA16 LQDSQNPFQYWIVSVIENVGGRLRLRYVGLEDTESYDQWLFYLDYRLRPVGWCQENKYRM :..:: ...: . : .:. ... . . :::: : . ...:::::.:.. . KIAA17 AVDKKNPSFICVATVTDMVDNRFLVHFDNWD--ESYDYWCEASSPHIHPVGWCKEHRRTL 380 390 400 410 420 430 270 280 290 300 310 320 KIAA16 -DPPSEIYPLKMASEWKCTLEKSLIDAAKFPLPMEVFKDHADLRSHFFTVGMKLETVNMC ::. :: : .: : .. ..: : ..:: . : : ::::.:. KIAA17 ITPPG--YPNVKHFSW----DKYLEETNSLPAPARAFKVKP---PHGFQKKMKLEVVDKR 440 450 460 470 480 330 340 350 360 370 380 KIAA16 EPFYISPASVTKVFNNHFFQVTIDDLRPEPSKLSMLCHADSLGILPVQWCLKNGVSLTPP .:..: :.:. . ..: .: .: . .. ::: : :: :: :.: : :: KIAA17 NPMFIRVATVADT-DDHRVKVHFDGWN---NCYDYWIDADSPDIHPVGWCSKTGHPLQPP 490 500 510 520 530 540 390 400 410 420 430 440 KIAA16 KGYSGQDFDWADYHKQHGAQEAPPFCFRNTSFSRGFTKNMKLEAVNPRNPGELCVASVVS : .. :. .::. .: : .:. . . . ..:.. .. : : .. KIAA17 --LSPLELMEAS---EHGGCSTPG-C-------KGIGHFKRARHLGPHSAAN-CPYSEIN 550 560 570 580 590 450 460 470 480 490 500 KIAA16 V-KGRLMWLHLEGLQTPVPEVIVDVESMDIFPVGWCEANSYPLTAPHKTVSQKKRKIAVV . : :.. .: : . : KIAA17 LNKDRIFPDRLSGEMPPASPSFPRNKRTDANESSSSPEIRDQHADDVKEDFEERTESEMR 600 610 620 630 640 650 904 residues in 1 query sequences 1986601 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:10:22 2008 done: Thu Dec 18 15:10:22 2008 Total Scan time: 0.630 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]