hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07513843/chunk_1/iprscan-20080502-07513843.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1615 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 294.5 1.8e-85 10 PF00096.16.fs Zinc finger, C2H2 type 291.3 1.6e-84 11 PF01096.9.fs Transcription factor S-II (TFIIS) 51.0 4.5e-15 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 2/11 203 225 .. 1 24 [] 31.6 1.2e-06 PF00096.16.ls 2/10 203 225 .. 1 24 [] 33.6 6.4e-07 PF00096.16.ls 3/10 231 253 .. 1 24 [] 29.8 8.7e-06 PF00096.16.fs 3/11 231 253 .. 1 24 [] 27.9 1.1e-05 PF00096.16.ls 4/10 259 281 .. 1 24 [] 28.8 1.7e-05 PF00096.16.fs 4/11 259 281 .. 1 24 [] 26.9 1.9e-05 PF00096.16.ls 5/10 287 309 .. 1 24 [] 29.6 1e-05 PF00096.16.fs 5/11 287 309 .. 1 24 [] 27.7 1.2e-05 PF00096.16.ls 6/10 315 337 .. 1 24 [] 37.6 4.1e-08 PF00096.16.fs 6/11 315 337 .. 1 24 [] 35.6 1.3e-07 PF00096.16.fs 7/11 343 365 .. 1 24 [] 27.5 1.3e-05 PF00096.16.ls 7/10 343 365 .. 1 24 [] 29.5 1.1e-05 PF00096.16.fs 8/11 371 393 .. 1 24 [] 30.7 2.1e-06 PF00096.16.ls 8/10 371 393 .. 1 24 [] 32.7 1.2e-06 PF00096.16.fs 9/11 399 421 .. 1 24 [] 35.9 1e-07 PF00096.16.ls 9/10 399 421 .. 1 24 [] 37.9 3.2e-08 PF00096.16.fs 10/11 427 449 .. 1 24 [] 31.7 1.2e-06 PF00096.16.ls 10/10 427 449 .. 1 24 [] 33.7 6.1e-07 Alignments of top-scoring domains: PF00096.16.fs: domain 2 of 11, from 203 to 225: score 31.6, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ CgksF+ +++L+rH+++H KIAA1615 203 FECS-FCGKSFRVHAQLTRHQKIH 225 PF00096.16.ls: domain 2 of 10, from 203 to 225: score 33.6, E = 6.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ CgksF+ +++L+rH+++H KIAA1615 203 FECS-FCGKSFRVHAQLTRHQKIH 225 PF00096.16.ls: domain 3 of 10, from 231 to 253: score 29.8, E = 8.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk F+ +s+L+ H+r+H KIAA1615 231 YKCM-ECGKDFRFHSQLTEHQRIH 253 PF00096.16.fs: domain 3 of 11, from 231 to 253: score 27.9, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk F+ +s+L+ H+r+H KIAA1615 231 YKCM-ECGKDFRFHSQLTEHQRIH 253 PF00096.16.ls: domain 4 of 10, from 259 to 281: score 28.8, E = 1.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +C k+F+ +s+L H+r+H KIAA1615 259 YKCM-HCEKVFRISSQLIEHQRIH 281 PF00096.16.fs: domain 4 of 11, from 259 to 281: score 26.9, E = 1.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +C k+F+ +s+L H+r+H KIAA1615 259 YKCM-HCEKVFRISSQLIEHQRIH 281 PF00096.16.ls: domain 5 of 10, from 287 to 309: score 29.6, E = 1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F +L rH+r+H KIAA1615 287 YACK-ECGKAFGVCRELARHQRIH 309 PF00096.16.fs: domain 5 of 11, from 287 to 309: score 27.7, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F +L rH+r+H KIAA1615 287 YACK-ECGKAFGVCRELARHQRIH 309 PF00096.16.ls: domain 6 of 10, from 315 to 337: score 37.6, E = 4.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ Cgk+F+++s+L+rH+r+H KIAA1615 315 YECK-ACGKVFRNSSSLTRHQRIH 337 PF00096.16.fs: domain 6 of 11, from 315 to 337: score 35.6, E = 1.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ Cgk+F+++s+L+rH+r+H KIAA1615 315 YECK-ACGKVFRNSSSLTRHQRIH 337 PF00096.16.fs: domain 7 of 11, from 343 to 365: score 27.5, E = 1.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+F s+L+rH r+H KIAA1615 343 YKCK-ECEKAFGVGSELTRHERIH 365 PF00096.16.ls: domain 7 of 10, from 343 to 365: score 29.5, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+F s+L+rH r+H KIAA1615 343 YKCK-ECEKAFGVGSELTRHERIH 365 PF00096.16.fs: domain 8 of 11, from 371 to 393: score 30.7, E = 2.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+ s L +H+r+H KIAA1615 371 YECK-ECGKFFRLTSALIQHQRIH 393 PF00096.16.ls: domain 8 of 10, from 371 to 393: score 32.7, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+ s L +H+r+H KIAA1615 371 YECK-ECGKFFRLTSALIQHQRIH 393 PF00096.16.fs: domain 9 of 11, from 399 to 421: score 35.9, E = 1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+++s L+ H+r+H KIAA1615 399 YECK-VCGKAFRHSSALTEHQRIH 421 PF00096.16.ls: domain 9 of 10, from 399 to 421: score 37.9, E = 3.2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+++s L+ H+r+H KIAA1615 399 YECK-VCGKAFRHSSALTEHQRIH 421 PF00096.16.fs: domain 10 of 11, from 427 to 449: score 31.7, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ Cgk+F+++s++++H+r+H KIAA1615 427 YECK-ACGKAFRHSSSFTKHQRIH 449 PF00096.16.ls: domain 10 of 10, from 427 to 449: score 33.7, E = 6.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ Cgk+F+++s++++H+r+H KIAA1615 427 YECK-ACGKAFRHSSSFTKHQRIH 449 //