hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07450460/chunk_1/iprscan-20080502-07450460.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1611 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 575.5 2.1e-168 20 SM00349 126.1 3.9e-33 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 3 63 .. 1 62 [] 126.1 3.9e-33 SM00355 1/20 252 274 .. 1 23 [] 30.5 0.00023 SM00355 2/20 280 302 .. 1 23 [] 29.5 0.00046 SM00355 3/20 308 330 .. 1 23 [] 27.0 0.0026 SM00355 4/20 336 358 .. 1 23 [] 28.7 0.00078 SM00355 5/20 364 386 .. 1 23 [] 26.8 0.0031 SM00355 6/20 392 414 .. 1 23 [] 28.0 0.0013 SM00355 7/20 420 442 .. 1 23 [] 27.6 0.0017 SM00355 8/20 448 470 .. 1 23 [] 26.9 0.0027 SM00355 9/20 476 498 .. 1 23 [] 28.9 0.0007 SM00355 10/20 504 526 .. 1 23 [] 29.1 0.00059 SM00355 11/20 532 554 .. 1 23 [] 28.9 0.00071 SM00355 12/20 560 582 .. 1 23 [] 30.9 0.00018 SM00355 13/20 588 610 .. 1 23 [] 27.6 0.0017 SM00355 14/20 616 638 .. 1 23 [] 27.0 0.0026 SM00355 15/20 644 666 .. 1 23 [] 26.4 0.0038 SM00355 16/20 672 694 .. 1 23 [] 30.9 0.00017 SM00355 17/20 700 722 .. 1 23 [] 28.9 0.00069 SM00355 18/20 728 750 .. 1 23 [] 30.6 0.00021 SM00355 19/20 756 778 .. 1 23 [] 31.4 0.00012 SM00355 20/20 784 806 .. 1 23 [] 29.7 0.0004 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 3 to 63: score 126.1, E = 3.9e-33 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk +tF+DVA++FsqEEW++LDpaQr+LYRdVMlENY nLvSLG++++ KIAA1611 3 LTFRDVAIEFSQEEWKCLDPAQRILYRDVMLENYWNLVSLGLCHFDM 49 pdliskLEqgeEpwi<-* is LE+g+Epw+ KIAA1611 50 -NIISMLEEGKEPWT 63 SM00355: domain 1 of 20, from 252 to 274: score 30.5, E = 0.00023 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++ ++L+ H r+H KIAA1611 252 YKCNE-CGKAFTQNsNLTSHRRIH 274 SM00355: domain 2 of 20, from 280 to 302: score 29.5, E = 0.00046 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+f+ +++L+ H+ +H KIAA1611 280 YKCSE-CGKTFTVRsNLTIHQVIH 302 SM00355: domain 3 of 20, from 308 to 330: score 27.0, E = 0.0026 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+f++ + L H r+H KIAA1611 308 YKCHE-CGKVFRHNsYLATHRRIH 330 SM00355: domain 4 of 20, from 336 to 358: score 28.7, E = 0.00078 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f+ +++L+ H+ +H KIAA1611 336 YKCNE-CGKAFRGHsNLTTHQLIH 358 SM00355: domain 5 of 20, from 364 to 386: score 26.8, E = 0.0031 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk f++ ++L+ H r+H KIAA1611 364 FKCNE-CGKLFTQNsHLISHWRIH 386 SM00355: domain 6 of 20, from 392 to 414: score 28.0, E = 0.0013 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs +++L H+ +H KIAA1611 392 YKCNE-CGKAFSVRsSLAIHQTIH 414 SM00355: domain 7 of 20, from 420 to 442: score 27.6, E = 0.0017 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+f+ + L rH rvH KIAA1611 420 YKCNE-CGKVFRYNsYLGRHRRVH 442 SM00355: domain 8 of 20, from 448 to 470: score 26.9, E = 0.0027 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs +++L H+ +H KIAA1611 448 YKCNE-CGKAFSMHsNLATHQVIH 470 SM00355: domain 9 of 20, from 476 to 498: score 28.9, E = 0.0007 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C+k+f++ ++L +H r+H KIAA1611 476 FKCNE-CSKVFTQNsQLANHRRIH 498 SM00355: domain 10 of 20, from 504 to 526: score 29.1, E = 0.00059 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs +++L+ H+ +H KIAA1611 504 YKCNE-CGKAFSVRsSLTTHQAIH 526 SM00355: domain 11 of 20, from 532 to 554: score 28.9, E = 0.00071 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC + Cgksf++k++L+ H +H KIAA1611 532 YKCIE-CGKSFTQKsHLRSHRGIH 554 SM00355: domain 12 of 20, from 560 to 582: score 30.9, E = 0.00018 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+f + ++L rH rvH KIAA1611 560 YKCNE-CGKVFAQTsQLARHWRVH 582 SM00355: domain 13 of 20, from 588 to 610: score 27.6, E = 0.0017 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC+ Cg+ fs++++L+ H+ +H KIAA1611 588 YKCND-CGRAFSDRsSLTFHQAIH 610 SM00355: domain 14 of 20, from 616 to 638: score 27.0, E = 0.0026 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+f++ + L H r+H KIAA1611 616 YKCHE-CGKVFRHNsYLATHRRIH 638 SM00355: domain 15 of 20, from 644 to 666: score 26.4, E = 0.0038 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs +++L+ H +H KIAA1611 644 YKCNE-CGKAFSMHsNLTTHKVIH 666 SM00355: domain 16 of 20, from 672 to 694: score 30.9, E = 0.00017 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+f++ ++L +H+r+H KIAA1611 672 YKCNQ-CGKVFTQNsHLANHQRTH 694 SM00355: domain 17 of 20, from 700 to 722: score 28.9, E = 0.00069 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk fs +++L+ H+ +H KIAA1611 700 YRCNE-CGKAFSVRsSLTTHQAIH 722 SM00355: domain 18 of 20, from 728 to 750: score 30.6, E = 0.00021 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+f++ +L +H r+H KIAA1611 728 YKCNE-CGKVFTQNaHLANHRRIH 750 SM00355: domain 19 of 20, from 756 to 778: score 31.4, E = 0.00012 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f+ +++L+ Hm +H KIAA1611 756 YRCTE-CGKAFRVRsSLTTHMAIH 778 SM00355: domain 20 of 20, from 784 to 806: score 29.7, E = 0.0004 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+f++ ++L H r+H KIAA1611 784 YKCNE-CGKVFRQSsNLASHHRMH 806 //