hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07450460/chunk_1/iprscan-20080502-07450460.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1611 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 701.2 7e-208 20 PF00096.16.fs Zinc finger, C2H2 type 661.8 4.9e-196 20 PF01096.9.fs Transcription factor S-II (TFIIS) 151.6 2.9e-46 20 PF01286.9.fs XPA protein N-terminal 101.1 4.5e-28 19 PF01352.17.fs KRAB box 97.9 3.3e-27 1 PF01352.17.ls KRAB box 99.9 7e-27 1 PF07754.2.fs Domain of unknown function (DUF1610) 52.3 5.1e-13 19 PF04032.6.fs RNAse P Rpr2/Rpp21/SNM1 subunit domain 39.5 6.7e-12 16 PF02892.5.fs BED zinc finger 31.2 1.5e-08 11 PF08792.1.fs A2L zinc ribbon domain 27.6 2.6e-06 15 PF07754.2.ls Domain of unknown function (DUF1610) 30.2 6.6e-06 11 PF04606.3.fs Ogr/Delta-like zinc finger 21.9 3e-05 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.ls 1/1 3 43 .. 1 41 [] 99.9 7e-27 PF01352.17.fs 1/1 3 43 .. 1 41 [] 97.9 3.3e-27 PF00096.16.fs 1/20 252 274 .. 1 24 [] 37.5 4.3e-08 PF00096.16.ls 1/20 252 274 .. 1 24 [] 39.5 1.1e-08 PF00096.16.fs 2/20 280 302 .. 1 24 [] 34.3 2.6e-07 PF00096.16.ls 2/20 280 302 .. 1 24 [] 36.3 9.7e-08 PF00096.16.ls 3/20 308 330 .. 1 24 [] 34.2 4.2e-07 PF00096.16.fs 3/20 308 330 .. 1 24 [] 32.2 8.8e-07 PF00096.16.fs 4/20 336 358 .. 1 24 [] 32.9 6.1e-07 PF00096.16.ls 4/20 336 358 .. 1 24 [] 34.8 2.7e-07 PF00096.16.ls 5/20 364 386 .. 1 24 [] 35.1 2.2e-07 PF00096.16.fs 5/20 364 386 .. 1 24 [] 33.2 5.1e-07 PF00096.16.fs 6/20 392 414 .. 1 24 [] 31.9 1e-06 PF00096.16.ls 6/20 392 414 .. 1 24 [] 33.9 5.1e-07 PF00096.16.fs 7/20 420 442 .. 1 24 [] 31.4 1.4e-06 PF00096.16.ls 7/20 420 442 .. 1 24 [] 33.3 7.6e-07 PF00096.16.ls 8/20 448 470 .. 1 24 [] 33.8 5.4e-07 PF00096.16.fs 8/20 448 470 .. 1 24 [] 31.9 1.1e-06 PF00096.16.fs 9/20 476 498 .. 1 24 [] 32.4 8.1e-07 PF00096.16.ls 9/20 476 498 .. 1 24 [] 34.3 3.8e-07 PF00096.16.ls 10/20 504 526 .. 1 24 [] 35.9 1.3e-07 PF00096.16.fs 10/20 504 526 .. 1 24 [] 33.9 3.4e-07 PF00096.16.ls 11/20 532 554 .. 1 24 [] 28.1 2.9e-05 PF00096.16.fs 11/20 532 554 .. 1 24 [] 26.1 2.9e-05 PF00096.16.ls 12/20 560 582 .. 1 24 [] 37.1 5.7e-08 PF00096.16.fs 12/20 560 582 .. 1 24 [] 35.1 1.7e-07 PF00096.16.ls 13/20 588 610 .. 1 24 [] 34.1 4.7e-07 PF00096.16.fs 13/20 588 610 .. 1 24 [] 32.1 9.6e-07 PF00096.16.ls 14/20 616 638 .. 1 24 [] 34.2 4.2e-07 PF00096.16.fs 14/20 616 638 .. 1 24 [] 32.2 8.8e-07 PF00096.16.fs 15/20 644 666 .. 1 24 [] 30.7 2.2e-06 PF00096.16.ls 15/20 644 666 .. 1 24 [] 32.6 1.3e-06 PF00096.16.ls 16/20 672 694 .. 1 24 [] 39.0 1.5e-08 PF00096.16.fs 16/20 672 694 .. 1 24 [] 37.0 5.6e-08 PF00096.16.ls 17/20 700 722 .. 1 24 [] 35.6 1.6e-07 PF00096.16.fs 17/20 700 722 .. 1 24 [] 33.6 3.9e-07 PF00096.16.ls 18/20 728 750 .. 1 24 [] 36.8 7e-08 PF00096.16.fs 18/20 728 750 .. 1 24 [] 34.8 2e-07 PF00096.16.fs 19/20 756 778 .. 1 24 [] 34.0 3.3e-07 PF00096.16.ls 19/20 756 778 .. 1 24 [] 35.9 1.3e-07 PF00096.16.fs 20/20 784 806 .. 1 24 [] 34.6 2.2e-07 PF00096.16.ls 20/20 784 806 .. 1 24 [] 36.6 8.1e-08 Alignments of top-scoring domains: PF01352.17.ls: domain 1 of 1, from 3 to 43: score 99.9, E = 7e-27 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* +tF+DVa++F+qEEW++LdpaQr LYrdVMlENy nLvSlg KIAA1611 3 LTFRDVAIEFSQEEWKCLDPAQRILYRDVMLENYWNLVSLG 43 PF01352.17.fs: domain 1 of 1, from 3 to 43: score 97.9, E = 3.3e-27 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* +tF+DVa++F+qEEW++LdpaQr LYrdVMlENy nLvSlg KIAA1611 3 LTFRDVAIEFSQEEWKCLDPAQRILYRDVMLENYWNLVSLG 43 PF00096.16.fs: domain 1 of 20, from 252 to 274: score 37.5, E = 4.3e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++snL++H+r+H KIAA1611 252 YKCN-ECGKAFTQNSNLTSHRRIH 274 PF00096.16.ls: domain 1 of 20, from 252 to 274: score 39.5, E = 1.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++snL++H+r+H KIAA1611 252 YKCN-ECGKAFTQNSNLTSHRRIH 274 PF00096.16.fs: domain 2 of 20, from 280 to 302: score 34.3, E = 2.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ +snL+ H+ +H KIAA1611 280 YKCS-ECGKTFTVRSNLTIHQVIH 302 PF00096.16.ls: domain 2 of 20, from 280 to 302: score 36.3, E = 9.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ +snL+ H+ +H KIAA1611 280 YKCS-ECGKTFTVRSNLTIHQVIH 302 PF00096.16.ls: domain 3 of 20, from 308 to 330: score 34.2, E = 4.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s L +H+r+H KIAA1611 308 YKCH-ECGKVFRHNSYLATHRRIH 330 PF00096.16.fs: domain 3 of 20, from 308 to 330: score 32.2, E = 8.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s L +H+r+H KIAA1611 308 YKCH-ECGKVFRHNSYLATHRRIH 330 PF00096.16.fs: domain 4 of 20, from 336 to 358: score 32.9, E = 6.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ +snL++H+ +H KIAA1611 336 YKCN-ECGKAFRGHSNLTTHQLIH 358 PF00096.16.ls: domain 4 of 20, from 336 to 358: score 34.8, E = 2.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ +snL++H+ +H KIAA1611 336 YKCN-ECGKAFRGHSNLTTHQLIH 358 PF00096.16.ls: domain 5 of 20, from 364 to 386: score 35.1, E = 2.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk F+++s+L +H+r+H KIAA1611 364 FKCN-ECGKLFTQNSHLISHWRIH 386 PF00096.16.fs: domain 5 of 20, from 364 to 386: score 33.2, E = 5.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk F+++s+L +H+r+H KIAA1611 364 FKCN-ECGKLFTQNSHLISHWRIH 386 PF00096.16.fs: domain 6 of 20, from 392 to 414: score 31.9, E = 1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs +s+L H+ +H KIAA1611 392 YKCN-ECGKAFSVRSSLAIHQTIH 414 PF00096.16.ls: domain 6 of 20, from 392 to 414: score 33.9, E = 5.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs +s+L H+ +H KIAA1611 392 YKCN-ECGKAFSVRSSLAIHQTIH 414 PF00096.16.fs: domain 7 of 20, from 420 to 442: score 31.4, E = 1.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ +s L rH+r+H KIAA1611 420 YKCN-ECGKVFRYNSYLGRHRRVH 442 PF00096.16.ls: domain 7 of 20, from 420 to 442: score 33.3, E = 7.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ +s L rH+r+H KIAA1611 420 YKCN-ECGKVFRYNSYLGRHRRVH 442 PF00096.16.ls: domain 8 of 20, from 448 to 470: score 33.8, E = 5.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs +snL +H+ +H KIAA1611 448 YKCN-ECGKAFSMHSNLATHQVIH 470 PF00096.16.fs: domain 8 of 20, from 448 to 470: score 31.9, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs +snL +H+ +H KIAA1611 448 YKCN-ECGKAFSMHSNLATHQVIH 470 PF00096.16.fs: domain 9 of 20, from 476 to 498: score 32.4, E = 8.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C k+F+++s+L +H+r+H KIAA1611 476 FKCN-ECSKVFTQNSQLANHRRIH 498 PF00096.16.ls: domain 9 of 20, from 476 to 498: score 34.3, E = 3.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C k+F+++s+L +H+r+H KIAA1611 476 FKCN-ECSKVFTQNSQLANHRRIH 498 PF00096.16.ls: domain 10 of 20, from 504 to 526: score 35.9, E = 1.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs +s+L++H+ +H KIAA1611 504 YKCN-ECGKAFSVRSSLTTHQAIH 526 PF00096.16.fs: domain 10 of 20, from 504 to 526: score 33.9, E = 3.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs +s+L++H+ +H KIAA1611 504 YKCN-ECGKAFSVRSSLTTHQAIH 526 PF00096.16.ls: domain 11 of 20, from 532 to 554: score 28.1, E = 2.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +CgksF++ks+L++H+ +H KIAA1611 532 YKCI-ECGKSFTQKSHLRSHRGIH 554 PF00096.16.fs: domain 11 of 20, from 532 to 554: score 26.1, E = 2.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +CgksF++ks+L++H+ +H KIAA1611 532 YKCI-ECGKSFTQKSHLRSHRGIH 554 PF00096.16.ls: domain 12 of 20, from 560 to 582: score 37.1, E = 5.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F + s+L rH+r+H KIAA1611 560 YKCN-ECGKVFAQTSQLARHWRVH 582 PF00096.16.fs: domain 12 of 20, from 560 to 582: score 35.1, E = 1.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F + s+L rH+r+H KIAA1611 560 YKCN-ECGKVFAQTSQLARHWRVH 582 PF00096.16.ls: domain 13 of 20, from 588 to 610: score 34.1, E = 4.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCg++Fs++s+L+ H+ +H KIAA1611 588 YKCN-DCGRAFSDRSSLTFHQAIH 610 PF00096.16.fs: domain 13 of 20, from 588 to 610: score 32.1, E = 9.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCg++Fs++s+L+ H+ +H KIAA1611 588 YKCN-DCGRAFSDRSSLTFHQAIH 610 PF00096.16.ls: domain 14 of 20, from 616 to 638: score 34.2, E = 4.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s L +H+r+H KIAA1611 616 YKCH-ECGKVFRHNSYLATHRRIH 638 PF00096.16.fs: domain 14 of 20, from 616 to 638: score 32.2, E = 8.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s L +H+r+H KIAA1611 616 YKCH-ECGKVFRHNSYLATHRRIH 638 PF00096.16.fs: domain 15 of 20, from 644 to 666: score 30.7, E = 2.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs +snL++H+ +H KIAA1611 644 YKCN-ECGKAFSMHSNLTTHKVIH 666 PF00096.16.ls: domain 15 of 20, from 644 to 666: score 32.6, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs +snL++H+ +H KIAA1611 644 YKCN-ECGKAFSMHSNLTTHKVIH 666 PF00096.16.ls: domain 16 of 20, from 672 to 694: score 39.0, E = 1.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+L +H+rtH KIAA1611 672 YKCN-QCGKVFTQNSHLANHQRTH 694 PF00096.16.fs: domain 16 of 20, from 672 to 694: score 37.0, E = 5.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+L +H+rtH KIAA1611 672 YKCN-QCGKVFTQNSHLANHQRTH 694 PF00096.16.ls: domain 17 of 20, from 700 to 722: score 35.6, E = 1.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs +s+L++H+ +H KIAA1611 700 YRCN-ECGKAFSVRSSLTTHQAIH 722 PF00096.16.fs: domain 17 of 20, from 700 to 722: score 33.6, E = 3.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs +s+L++H+ +H KIAA1611 700 YRCN-ECGKAFSVRSSLTTHQAIH 722 PF00096.16.ls: domain 18 of 20, from 728 to 750: score 36.8, E = 7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++++L +H+r+H KIAA1611 728 YKCN-ECGKVFTQNAHLANHRRIH 750 PF00096.16.fs: domain 18 of 20, from 728 to 750: score 34.8, E = 2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++++L +H+r+H KIAA1611 728 YKCN-ECGKVFTQNAHLANHRRIH 750 PF00096.16.fs: domain 19 of 20, from 756 to 778: score 34.0, E = 3.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +s+L++H+ +H KIAA1611 756 YRCT-ECGKAFRVRSSLTTHMAIH 778 PF00096.16.ls: domain 19 of 20, from 756 to 778: score 35.9, E = 1.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +s+L++H+ +H KIAA1611 756 YRCT-ECGKAFRVRSSLTTHMAIH 778 PF00096.16.fs: domain 20 of 20, from 784 to 806: score 34.6, E = 2.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++snL +H r+H KIAA1611 784 YKCN-ECGKVFRQSSNLASHHRMH 806 PF00096.16.ls: domain 20 of 20, from 784 to 806: score 36.6, E = 8.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++snL +H r+H KIAA1611 784 YKCN-ECGKVFRQSSNLASHHRMH 806 //