hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07432845/chunk_1/iprscan-20080502-07432845.nocrc
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Query sequence: KIAA1610
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF01448.14.fs   ELM2 domain                              65.6    1.9e-18   1
PF01448.14.ls   ELM2 domain                              67.3    4.5e-17   1
PF00249.21.fs   Myb-like DNA-binding domain              40.5    4.1e-10   1
PF00249.21.ls   Myb-like DNA-binding domain              42.2    1.6e-09   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF01448.14.fs     1/1     152   211 ..     1    82 []    65.6  1.9e-18
PF01448.14.ls     1/1     152   211 ..     1    82 []    67.3  4.5e-17
PF00249.21.fs     1/1     257   303 ..     1    65 []    40.5  4.1e-10
PF00249.21.ls     1/1     257   303 ..     1    65 []    42.2  1.6e-09

Alignments of top-scoring domains:
PF01448.14.fs: domain 1 of 1, from 152 to 211: score 65.6, E = 1.9e-18
                   *->geIrVGskyQAdvPefidrqleeterdesedredLTkkedeekldel
                      +eI+VGs++QA++P +i+r++e  e+++++d             d+l
    KIAA1610   152    KEIMVGSMFQAEIPVGICRYKE-NEKVYEND-------------DQL 184  

                   vWsPeDsqnqlddekideylrlarskksirtfera<-*
                   +W+Pe    +l + k+  +l++a +    rt+ +    
    KIAA1610   185 LWDPE----YLPEDKVIIFLKDASR----RTGDEK    211  

PF01448.14.ls: domain 1 of 1, from 152 to 211: score 67.3, E = 4.5e-17
                   *->geIrVGskyQAdvPefidrqleeterdesedredLTkkedeekldel
                      +eI+VGs++QA++P +i+r++e  e+++++d             d+l
    KIAA1610   152    KEIMVGSMFQAEIPVGICRYKE-NEKVYEND-------------DQL 184  

                   vWsPeDsqnqlddekideylrlarskksirtfera<-*
                   +W+Pe    +l + k+  +l++a +    rt+ +    
    KIAA1610   185 LWDPE----YLPEDKVIIFLKDASR----RTGDEK    211  

PF00249.21.fs: domain 1 of 1, from 257 to 303: score 40.5, E = 4.1e-10
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                       ++Wt+eE+  ++++++ +Gk+           +++I +        
    KIAA1610   257    LSVWTEEECRNFEQGLKAYGKD-----------FHLIQANK------ 286  

                   nvlgrtaeqcklryykyk<-*
                    v +r++ +c+ +yy++k   
    KIAA1610   287 -VRTRSVGECVAFYYMWK    303  

PF00249.21.ls: domain 1 of 1, from 257 to 303: score 42.2, E = 1.6e-09
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                       ++Wt+eE+  ++++++ +Gk+           +++I +        
    KIAA1610   257    LSVWTEEECRNFEQGLKAYGKD-----------FHLIQANK------ 286  

                   nvlgrtaeqcklryykyk<-*
                    v +r++ +c+ +yy++k   
    KIAA1610   287 -VRTRSVGECVAFYYMWK    303  

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