hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07400524/chunk_1/iprscan-20080502-07400524.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1608
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00799                                                 190.7    1.4e-52   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00799    1/1       3   171 ..     1   204 []   190.7  1.4e-52

Alignments of top-scoring domains:
SM00799: domain 1 of 1, from 3 to 171: score 190.7, E = 1.4e-52
                   *->yapkcisCilSrlpffelFrkfLnelyrllasdsssellleellisl
                      +  +++     +l f +      +el  +l+  +++      ll+ l
    KIAA1608     3    TEIRVL-----PLIFRS------EELLLYLK--ENQWNE---LLETL 33   

                   llspvPlPppggslvlsslsSyvslgppgdlvvpielqrPddselplide
                   +  p+P   pg s++l           + +++    ++ Pd+ elp+i+e
    KIAA1608    34 HKLPIP--DPGVSVHL-----------SVHSY----FTVPDTRELPSIPE 66   

                   nfdlheLfecLgvenvlqLfaslLlErrIifvSsnlstLsavieallaLL
                   n++l+e+f +++v+n+l+L+as+L ErrI++++s+lstL+a+i+   a+L
    KIAA1608    67 NRNLTEYFVAVDVNNMLHLYASMLYERRILIICSKLSTLTACIHGSAAML 116  

                   yPFvWQhvyIPiLPasLldvLsAPtPFiiGvhssffeevkeepdeeddvv
                   yP+ WQhvyIP+LP++Lld+++AP+P++iG+h s++e v+++ +++  vv
    KIAA1608   117 YPMYWQHVYIPVLPPHLLDYCCAPMPYLIGIHLSLMEKVRNMALDD--VV 164  

                   vVDLDtg<-*
                   + ++Dt+   
    KIAA1608   165 ILNVDTN    171  

//