hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07400524/chunk_1/iprscan-20080502-07400524.nocrc
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Query sequence: KIAA1608
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02141.11.fs DENN (AEX-3) domain                            233.7    3.8e-67   1
PF02141.11.ls DENN (AEX-3) domain                            207.4      3e-59   1
PF03455.9.fs dDENN domain                                    25.0    2.2e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02141.11.fs   1/1       6   171 ..    54   231 .]   233.7  3.8e-67
PF02141.11.ls   1/1       6   171 ..     1   231 []   207.4    3e-59
PF03455.9.fs   1/1     202   230 ..     1    30 [.    25.0  2.2e-06

Alignments of top-scoring domains:
PF02141.11.fs: domain 1 of 1, from 6 to 171: score 233.7, E = 3.8e-67
                   *->rvltgvl...evLhdirE..lEslirnLlyevplPapGktirvkvfv
                      rvl+   +++e+L  ++E+++++l+++L++ +p+P+pG +++++v++
    KIAA1608     6    RVLPLIFrseELLLYLKEnqWNELLETLHK-LPIPDPGVSVHLSVHS 51   

                   lgagvkHyrplelilfplpdplplpledfdlaelFeaLGvenvlqLfaaa
                   ++++            p++++lp+++e+++l+e+F+a++v+n+l+L+a++
    KIAA1608    52 YFTV------------PDTRELPSIPENRNLTEYFVAVDVNNMLHLYASM 89   

                   LlErkiLflSsklsrLsscchAlvaLLYPleWqhpyIPvLPasLlsAEdv
                   L+Er+iL+++skls+L++c+h ++a+LYP++Wqh+yIPvLP++Ll   d+
    KIAA1608    90 LYERRILIICSKLSTLTACIHGSAAMLYPMYWQHVYIPVLPPHLL---DY 136  

                   LcAPtPFlIGVhssffelvkdlpleidvvvVDLDtn<-*
                   +cAP+P+lIG+h s++e+v++++l+ dvv++++Dtn   
    KIAA1608   137 CCAPMPYLIGIHLSLMEKVRNMALD-DVVILNVDTN    171  

PF02141.11.ls: domain 1 of 1, from 6 to 171: score 207.4, E = 3e-59
                   *->rvpksiCliSrlpffeaFrkvLlelkrvldssqasslppssglksgk
                      rv+           + +Fr   l+l+       +++           
    KIAA1608     6    RVL-----------PLIFRSEELLLYL-----KENQ----------- 25   

                   srdtvwrvltgvlevLhdirElEslirnLlyevplPapGktirvkvfvlg
                                        +++l+++L++ +p+P+pG +++++v++++
    KIAA1608    26 ---------------------WNELLETLHK-LPIPDPGVSVHLSVHSYF 53   

                   agvkHyrplelilfplpdplplpledfdlaelFeaLGvenvlqLfaaaLl
                   ++            p++++lp+++e+++l+e+F+a++v+n+l+L+a++L+
    KIAA1608    54 TV------------PDTRELPSIPENRNLTEYFVAVDVNNMLHLYASMLY 91   

                   ErkiLflSsklsrLsscchAlvaLLYPleWqhpyIPvLPasLlsAEdvLc
                   Er+iL+++skls+L++c+h ++a+LYP++Wqh+yIPvLP++Ll   d++c
    KIAA1608    92 ERRILIICSKLSTLTACIHGSAAMLYPMYWQHVYIPVLPPHLL---DYCC 138  

                   APtPFlIGVhssffelvkdlpleidvvvVDLDtn<-*
                   AP+P+lIG+h s++e+v++++l+ dvv++++Dtn   
    KIAA1608   139 APMPYLIGIHLSLMEKVRNMALD-DVVILNVDTN    171  

PF03455.9.fs: domain 1 of 1, from 202 to 230: score 25.0, E = 2.2e-06
                   *->lddqvreaFLrfFNasllggYrnfLryprk<-*
                       +d+v++aFL+++ a ++g+Yrn+L++++k   
    KIAA1608   202    TGDGVARAFLKAQ-AAFFGSYRNALKIEPK    230  

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