hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07382794/chunk_1/iprscan-20080502-07382794.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1607 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02138.8.ls Beige/BEACH domain 621.9 5.3e-184 1 PF02138.8.fs Beige/BEACH domain 620.0 1.9e-183 1 PF00400.22.ls WD domain, G-beta repeat 83.3 7.2e-22 5 PF00400.22.fs WD domain, G-beta repeat 77.5 7.1e-21 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02138.8.ls 1/1 625 907 .. 1 287 [] 621.9 5.3e-184 PF02138.8.fs 1/1 625 907 .. 1 287 [] 620.0 1.9e-183 PF00400.22.ls 2/5 1058 1096 .. 1 38 [] 36.1 1.1e-07 PF00400.22.fs 2/5 1058 1096 .. 1 38 [] 34.2 1.2e-08 PF00400.22.fs 3/5 1100 1137 .. 1 38 [] 11.8 0.024 PF00400.22.ls 4/5 1143 1186 .. 1 38 [] 25.2 0.00022 PF00400.22.fs 4/5 1143 1186 .. 1 38 [] 23.2 1.5e-05 Alignments of top-scoring domains: PF02138.8.ls: domain 1 of 1, from 625 to 907: score 621.9, E = 5.3e-184 *->TkRWqrGeISNFeYLmhLNtlAGRsyNDLsQYPVFPWIlADYtSesL ++Wq++ ISNFeYLm LNt AGR++ND +QYPVFPW+lADYtSe+L KIAA1607 625 LQKWQKRDISNFEYLMYLNTAAGRTCNDYMQYPVFPWVLADYTSETL 671 DLsnPstFRdLSKPiGAQspeReeqFleRYesledpeekevppFHYGtHY L nP++FRdLSKP+GAQ++eR+ +F+ R+++ e e + + HY tHY KIAA1607 672 NLANPKIFRDLSKPMGAQTKERKLKFIQRFKEVEKTEGDMTVQCHYYTHY 721 SSagiVlfYLiRlePFteefLaLQgGkFDhADRlFhSieetWrsaslenm SSa iV +YL+R++PFt+ f aLQgG+FD ADR+FhS+++tW sas+enm KIAA1607 722 SSAIIVASYLVRMPPFTQAFCALQGGSFDVADRMFHSVKSTWESASRENM 771 tDVKELIPEFFyLPEfLvNrngfDlGvrQnGekVnDVdLPPWAkgDEKAd +DV+EL+PEFFyLPEfL+N ng +G +Q+G++++DV LPPWA g d KIAA1607 772 SDVRELTPEFFYLPEFLTNCNGVEFGCMQDGTVLGDVQLPPWADG----D 817 PeeFiqkhReALESdYVSahLHeWIDLIFGYKQrGkeAvkAiNVFhhltY P+ Fi +hR ALESd+VSa+LH+WIDLIFGYKQ+G++Av+A+N+Fh+++Y KIAA1607 818 PRKFISLHRKALESDFVSANLHHWIDLIFGYKQQGPAAVDAVNIFHPYFY 867 eGaVDldsieDPverrAieaqIknFGQTPkQLFtkPHPkR<-* +Dl+si+DP+ + i++++ nFGQ PkQLFtkPHP R KIAA1607 868 GDRMDLSSITDPLIKSTILGFVSNFGQVPKQLFTKPHPAR 907 PF02138.8.fs: domain 1 of 1, from 625 to 907: score 620.0, E = 1.9e-183 *->TkRWqrGeISNFeYLmhLNtlAGRsyNDLsQYPVFPWIlADYtSesL ++Wq++ ISNFeYLm LNt AGR++ND +QYPVFPW+lADYtSe+L KIAA1607 625 LQKWQKRDISNFEYLMYLNTAAGRTCNDYMQYPVFPWVLADYTSETL 671 DLsnPstFRdLSKPiGAQspeReeqFleRYesledpeekevppFHYGtHY L nP++FRdLSKP+GAQ++eR+ +F+ R+++ e e + + HY tHY KIAA1607 672 NLANPKIFRDLSKPMGAQTKERKLKFIQRFKEVEKTEGDMTVQCHYYTHY 721 SSagiVlfYLiRlePFteefLaLQgGkFDhADRlFhSieetWrsaslenm SSa iV +YL+R++PFt+ f aLQgG+FD ADR+FhS+++tW sas+enm KIAA1607 722 SSAIIVASYLVRMPPFTQAFCALQGGSFDVADRMFHSVKSTWESASRENM 771 tDVKELIPEFFyLPEfLvNrngfDlGvrQnGekVnDVdLPPWAkgDEKAd +DV+EL+PEFFyLPEfL+N ng +G +Q+G++++DV LPPWA g d KIAA1607 772 SDVRELTPEFFYLPEFLTNCNGVEFGCMQDGTVLGDVQLPPWADG----D 817 PeeFiqkhReALESdYVSahLHeWIDLIFGYKQrGkeAvkAiNVFhhltY P+ Fi +hR ALESd+VSa+LH+WIDLIFGYKQ+G++Av+A+N+Fh+++Y KIAA1607 818 PRKFISLHRKALESDFVSANLHHWIDLIFGYKQQGPAAVDAVNIFHPYFY 867 eGaVDldsieDPverrAieaqIknFGQTPkQLFtkPHPkR<-* +Dl+si+DP+ + i++++ nFGQ PkQLFtkPHP R KIAA1607 868 GDRMDLSSITDPLIKSTILGFVSNFGQVPKQLFTKPHPAR 907 PF00400.22.ls: domain 2 of 5, from 1058 to 1096: score 36.1, E = 1.1e-07 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + + l+gHt +Vtc+a s +ll+sgS D+t+ +Wd KIAA1607 1058 LRLRqALyGHTQAVTCLAASVT-FSLLVSGSQDCTCILWD 1096 PF00400.22.fs: domain 2 of 5, from 1058 to 1096: score 34.2, E = 1.2e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + + l+gHt +Vtc+a s +ll+sgS D+t+ +Wd KIAA1607 1058 LRLRqALyGHTQAVTCLAASVT-FSLLVSGSQDCTCILWD 1096 PF00400.22.fs: domain 3 of 5, from 1100 to 1137: score 11.8, E = 0.024 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + ++ l++H +++++ +s + +++s+ ++ +W+ KIAA1607 1100 LTHVtRLpAHREGISAITISDV-SGTIVSCAG-AHLSLWN 1137 PF00400.22.ls: domain 4 of 5, from 1143 to 1186: score 25.2, E = 0.00022 *->geck.vl.gHtstVtcvafspd....sgpllasgSrDgtikiWd<-* +++ g ++++tc++ ++ + ++++++gS Dg +++W+ KIAA1607 1143 LASItTAwGPEGAITCCCLMEGpawdTSQIIITGSQDGMVRVWK 1186 PF00400.22.fs: domain 4 of 5, from 1143 to 1186: score 23.2, E = 1.5e-05 *->geck.vl.gHtstVtcvafspd....sgpllasgSrDgtikiWd<-* +++ g ++++tc++ ++ + ++++++gS Dg +++W+ KIAA1607 1143 LASItTAwGPEGAITCCCLMEGpawdTSQIIITGSQDGMVRVWK 1186 //