# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj09517.fasta.huge -Q ../query/KIAA1595.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1595, 471 aa vs ./tmplib.25089 library 1987034 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 6.2636+/-0.00654; mu= 7.0511+/- 0.443 mean_var=169.5495+/-41.129, 0's: 0 Z-trim: 4 B-trim: 0 in 0/40 Lambda= 0.098498 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0801 ( 1058 res) hg03949(revised) (1058) 398 69.1 1.6e-12 KIAA0111 ( 412 res) ha00659 ( 412) 369 64.5 1.5e-11 >>KIAA0801 ( 1058 res) hg03949(revised) (1058 aa) initn: 325 init1: 174 opt: 398 Z-score: 316.7 bits: 69.1 E(): 1.6e-12 Smith-Waterman score: 398; 31.727% identity (64.257% similar) in 249 aa overlap (4-250:520-756) 10 20 30 KIAA15 LSFQSGNIIVATPGRLEDMFRRKAEGLDLASCV ....::: ::::. ::. : . .. . KIAA08 ECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDML---AANSGRVTNL 490 500 510 520 530 540 40 50 60 70 80 90 KIAA15 RSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVR : . .:::::::..::::: .. :.. . .:.: .:::: . .: :.: : .:.. KIAA08 RRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIE 550 560 570 580 590 600 100 110 120 130 140 150 KIAA15 VSVKEKGVAASSAQKTPSRLENYYMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEY :.: ..:. :. .:. .: . ..:: .:...: .... ...: :. KIAA08 VQVGGRSVVCSD-------VEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQ--EH 610 620 630 640 650 160 170 180 190 200 210 KIAA15 YGKALEVLVKG-VKIMCIHGKM-KYKRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWV :. :... : .:: . .: :..:. .:.. .:: :.: :::.:. .. : KIAA08 ADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILV 660 670 680 690 700 710 220 230 240 250 260 270 KIAA15 LQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEESYINFLAINQKCPLQEMKPQRNT ..:. :.. .::: :::.: :. : : .:. . : KIAA08 VNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEK 720 730 740 750 760 770 280 290 300 310 320 330 KIAA15 ADLLPKLKSMALADRAVFEKGMKAFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRM KIAA08 LWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQDSDDEDAAV 780 790 800 810 820 830 >>KIAA0111 ( 412 res) ha00659 (412 aa) initn: 396 init1: 210 opt: 369 Z-score: 299.0 bits: 64.5 E(): 1.5e-11 Smith-Waterman score: 412; 29.259% identity (61.481% similar) in 270 aa overlap (7-275:159-412) 10 20 30 KIAA15 LSFQSGNIIVATPGRLEDMFRRKAEGLDLASCVRSL .....::::. ::.::.. : . :.. KIAA01 ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS----LRT--RAI 130 140 150 160 170 180 40 50 60 70 80 90 KIAA15 DVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRVSV .:::::::..:. ::. .: . ..:: .. :.::: .:. ... . .:.:. : KIAA01 KMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILV 190 200 210 220 230 240 100 110 120 130 140 150 KIAA15 KEKGVAASSAQKTPSRLENYYMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGK :. .. . .. . : . . ::. : . . . ..: .: :.. . KIAA01 KRDELTLEGIKQF------FVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTE 250 260 270 280 290 160 170 180 190 200 210 KIAA15 ALEVLVKGVKIMCIHGKMKYK-RNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYD .. . . .:: : : :..:. :::. : .:. ::: :::.:.:.:. ...:: KIAA01 KMRE--ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYD 300 310 320 330 340 350 220 230 240 250 260 270 KIAA15 PPSNASAFVHRCGRTARIGHGGSALVFLLPMEESYINFLAINQKCPLQEMKPQRNTADLL :.: ..:: ::..: :. : :. :. . . . . ..:: :. :.:::. KIAA01 LPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEM-PM-NVADLI 360 370 380 390 400 410 280 290 300 310 320 330 KIAA15 PKLKSMALADRAVFEKGMKAFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRMPKMP 471 residues in 1 query sequences 1987034 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:09:32 2008 done: Thu Dec 18 15:09:32 2008 Total Scan time: 0.430 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]