hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07064009/chunk_1/iprscan-20080502-07064009.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1588 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 354.6 6.5e-102 13 SM00349 131.6 8.5e-35 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 75 135 .. 1 62 [] 131.6 8.5e-35 SM00355 1/13 240 262 .. 1 23 [] 25.9 0.0055 SM00355 2/13 268 290 .. 1 23 [] 30.5 0.00024 SM00355 3/13 296 318 .. 1 23 [] 28.6 0.00087 SM00355 4/13 324 346 .. 1 23 [] 24.2 0.018 SM00355 5/13 352 374 .. 1 23 [] 27.2 0.0023 SM00355 6/13 380 402 .. 1 23 [] 27.6 0.0017 SM00355 7/13 408 430 .. 1 23 [] 30.2 0.00029 SM00355 8/13 436 458 .. 1 23 [] 26.5 0.0038 SM00355 9/13 464 486 .. 1 23 [] 23.1 0.038 SM00355 10/13 492 514 .. 1 23 [] 24.8 0.012 SM00355 11/13 520 542 .. 1 23 [] 30.0 0.00033 SM00355 12/13 548 570 .. 1 23 [] 25.6 0.0068 SM00355 13/13 576 598 .. 1 23 [] 30.4 0.00024 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 75 to 135: score 131.6, E = 8.5e-35 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk VtF DVAVdF+++EW +LD++Qr LY+dVMlENYsnL+SLG +qv k KIAA1588 75 VTFQDVAVDFTEKEWPLLDSSQRKLYKDVMLENYSNLTSLG-YQVGK 120 pdliskLEqgeEpwi<-* p lis LEq+eEp + KIAA1588 121 PSLISHLEQEEEPRT 135 SM00355: domain 1 of 13, from 240 to 262: score 25.9, E = 0.0055 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ C+k f++ +L+rH r+H KIAA1588 240 HECHQ-CQKAFTTSaSLTRHRRIH 262 SM00355: domain 2 of 13, from 268 to 290: score 30.5, E = 0.00024 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ Cgk f++++aL+ H r+H KIAA1588 268 YECSD-CGKAFNDPsALRSHARTH 290 SM00355: domain 3 of 13, from 296 to 318: score 28.6, E = 0.00087 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ Cg f++ +aLk HmrvH KIAA1588 296 FDCSQ-CGNAFRTLsALKIHMRVH 318 SM00355: domain 4 of 13, from 324 to 346: score 24.2, E = 0.018 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk + + +L+ H r+H KIAA1588 324 YKCDQ-CGKAYGRScHLIAHKRTH 346 SM00355: domain 5 of 13, from 352 to 374: score 27.2, E = 0.0023 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ Cgk f ++++Lk+H+r H KIAA1588 352 YECHD-CGKAFQHPsHLKEHVRNH 374 SM00355: domain 6 of 13, from 380 to 402: score 27.6, E = 0.0017 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f++k++++ H + H KIAA1588 380 YACTQ-CGKAFRWKsNFNLHKKNH 402 SM00355: domain 7 of 13, from 408 to 430: score 30.2, E = 0.00029 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksf + + ++Hmr+H KIAA1588 408 YECKE-CGKSFGDLvSRRKHMRIH 430 SM00355: domain 8 of 13, from 436 to 458: score 26.5, E = 0.0038 *->ykCpigCgksfssk.aLkrHmrvH<-* +C + Cgk+f++++ Lk Hm +H KIAA1588 436 VECRQ-CGKTFRNQsILKTHMNSH 458 SM00355: domain 9 of 13, from 464 to 486: score 23.1, E = 0.038 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk fs ++L+ H ++H KIAA1588 464 YGCDL-CGKAFSASsNLTAHRKIH 486 SM00355: domain 10 of 13, from 492 to 514: score 24.8, E = 0.012 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C Cgk+f ++ + +rHm vH KIAA1588 492 YECAA-CGKVFGDYlSRRRHMSVH 514 SM00355: domain 11 of 13, from 520 to 542: score 30.0, E = 0.00033 *->ykCpigCgksfssk.aLkrHmrvH<-* +C + Cgk f++++ Lk Hmr+H KIAA1588 520 VECRQ-CGKAFRNQsTLKTHMRSH 542 SM00355: domain 12 of 13, from 548 to 570: score 25.6, E = 0.0068 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk fs ++L+ H r+H KIAA1588 548 YECDH-CGKAFSIGsNLNVHRRIH 570 SM00355: domain 13 of 13, from 576 to 598: score 30.4, E = 0.00024 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgk fs++++L+ H+++H KIAA1588 576 YECLV-CGKAFSDHsSLRSHVKTH 598 //