hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07064009/chunk_1/iprscan-20080502-07064009.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1588 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 396.9 2.8e-116 13 PF00096.16.fs Zinc finger, C2H2 type 371.3 1.4e-108 13 PF01352.17.fs KRAB box 94.7 2.8e-26 1 PF01352.17.ls KRAB box 96.7 6.6e-26 1 PF01096.9.fs Transcription factor S-II (TFIIS) 45.9 1.7e-13 12 PF02892.5.fs BED zinc finger 45.5 9.7e-13 6 PF01280.10.fs Ribosomal protein L19e 32.9 3e-09 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 75 115 .. 1 41 [] 94.7 2.8e-26 PF01352.17.ls 1/1 75 115 .. 1 41 [] 96.7 6.6e-26 PF00096.16.ls 1/13 240 262 .. 1 24 [] 31.0 4e-06 PF00096.16.fs 1/13 240 262 .. 1 24 [] 29.0 5.6e-06 PF00096.16.ls 2/13 268 290 .. 1 24 [] 37.3 4.8e-08 PF00096.16.fs 2/13 268 290 .. 1 24 [] 35.4 1.5e-07 PF00096.16.ls 3/13 296 318 .. 1 24 [] 30.9 4e-06 PF00096.16.fs 3/13 296 318 .. 1 24 [] 29.0 5.7e-06 PF00096.16.ls 4/13 324 346 .. 1 24 [] 28.4 2.3e-05 PF00096.16.fs 4/13 324 346 .. 1 24 [] 26.5 2.4e-05 PF00096.16.ls 5/13 352 374 .. 1 24 [] 33.1 9e-07 PF00096.16.fs 5/13 352 374 .. 1 24 [] 31.1 1.7e-06 PF00096.16.ls 6/13 380 402 .. 1 24 [] 30.2 6.6e-06 PF00096.16.fs 6/13 380 402 .. 1 24 [] 28.3 8.6e-06 PF00096.16.ls 7/13 408 430 .. 1 24 [] 30.8 4.5e-06 PF00096.16.fs 7/13 408 430 .. 1 24 [] 28.8 6.2e-06 PF00096.16.ls 8/13 436 458 .. 1 24 [] 25.5 0.00018 PF00096.16.fs 8/13 436 458 .. 1 24 [] 23.5 0.00013 PF00096.16.ls 9/13 464 486 .. 1 24 [] 30.6 4.9e-06 PF00096.16.fs 9/13 464 486 .. 1 24 [] 28.7 6.7e-06 PF00096.16.ls 10/13 492 514 .. 1 24 [] 19.6 0.01 PF00096.16.ls 11/13 520 542 .. 1 24 [] 32.9 1.1e-06 PF00096.16.fs 11/13 520 542 .. 1 24 [] 30.9 1.9e-06 PF00096.16.fs 12/13 548 570 .. 1 24 [] 29.7 3.7e-06 PF00096.16.ls 12/13 548 570 .. 1 24 [] 31.7 2.4e-06 PF00096.16.ls 13/13 576 598 .. 1 24 [] 34.8 2.8e-07 PF00096.16.fs 13/13 576 598 .. 1 24 [] 32.8 6.2e-07 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 75 to 115: score 94.7, E = 2.8e-26 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF+DVaVdFt++EW lLd++Qr+LY+dVMlENysnL+Slg KIAA1588 75 VTFQDVAVDFTEKEWPLLDSSQRKLYKDVMLENYSNLTSLG 115 PF01352.17.ls: domain 1 of 1, from 75 to 115: score 96.7, E = 6.6e-26 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF+DVaVdFt++EW lLd++Qr+LY+dVMlENysnL+Slg KIAA1588 75 VTFQDVAVDFTEKEWPLLDSSQRKLYKDVMLENYSNLTSLG 115 PF00096.16.ls: domain 1 of 13, from 240 to 262: score 31.0, E = 4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C+k+F+++++L+rH+r+H KIAA1588 240 HECH-QCQKAFTTSASLTRHRRIH 262 PF00096.16.fs: domain 1 of 13, from 240 to 262: score 29.0, E = 5.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C+k+F+++++L+rH+r+H KIAA1588 240 HECH-QCQKAFTTSASLTRHRRIH 262 PF00096.16.ls: domain 2 of 13, from 268 to 290: score 37.3, E = 4.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+F+++s L++H rtH KIAA1588 268 YECS-DCGKAFNDPSALRSHARTH 290 PF00096.16.fs: domain 2 of 13, from 268 to 290: score 35.4, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+F+++s L++H rtH KIAA1588 268 YECS-DCGKAFNDPSALRSHARTH 290 PF00096.16.ls: domain 3 of 13, from 296 to 318: score 30.9, E = 4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cg +F++ s Lk H+r+H KIAA1588 296 FDCS-QCGNAFRTLSALKIHMRVH 318 PF00096.16.fs: domain 3 of 13, from 296 to 318: score 29.0, E = 5.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cg +F++ s Lk H+r+H KIAA1588 296 FDCS-QCGNAFRTLSALKIHMRVH 318 PF00096.16.ls: domain 4 of 13, from 324 to 346: score 28.4, E = 2.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk++ r+ +L +H+rtH KIAA1588 324 YKCD-QCGKAYGRSCHLIAHKRTH 346 PF00096.16.fs: domain 4 of 13, from 324 to 346: score 26.5, E = 2.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk++ r+ +L +H+rtH KIAA1588 324 YKCD-QCGKAYGRSCHLIAHKRTH 346 PF00096.16.ls: domain 5 of 13, from 352 to 374: score 33.1, E = 9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+F ++s+Lk H r H KIAA1588 352 YECH-DCGKAFQHPSHLKEHVRNH 374 PF00096.16.fs: domain 5 of 13, from 352 to 374: score 31.1, E = 1.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+F ++s+Lk H r H KIAA1588 352 YECH-DCGKAFQHPSHLKEHVRNH 374 PF00096.16.ls: domain 6 of 13, from 380 to 402: score 30.2, E = 6.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F+ ksn++ H++ H KIAA1588 380 YACT-QCGKAFRWKSNFNLHKKNH 402 PF00096.16.fs: domain 6 of 13, from 380 to 402: score 28.3, E = 8.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F+ ksn++ H++ H KIAA1588 380 YACT-QCGKAFRWKSNFNLHKKNH 402 PF00096.16.ls: domain 7 of 13, from 408 to 430: score 30.8, E = 4.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF + + ++H+r+H KIAA1588 408 YECK-ECGKSFGDLVSRRKHMRIH 430 PF00096.16.fs: domain 7 of 13, from 408 to 430: score 28.8, E = 6.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF + + ++H+r+H KIAA1588 408 YECK-ECGKSFGDLVSRRKHMRIH 430 PF00096.16.ls: domain 8 of 13, from 436 to 458: score 25.5, E = 0.00018 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C +Cgk+F+++s Lk+H+++H KIAA1588 436 VECR-QCGKTFRNQSILKTHMNSH 458 PF00096.16.fs: domain 8 of 13, from 436 to 458: score 23.5, E = 0.00013 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C +Cgk+F+++s Lk+H+++H KIAA1588 436 VECR-QCGKTFRNQSILKTHMNSH 458 PF00096.16.ls: domain 9 of 13, from 464 to 486: score 30.6, E = 4.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ Cgk+Fs +snL++H+++H KIAA1588 464 YGCD-LCGKAFSASSNLTAHRKIH 486 PF00096.16.fs: domain 9 of 13, from 464 to 486: score 28.7, E = 6.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ Cgk+Fs +snL++H+++H KIAA1588 464 YGCD-LCGKAFSASSNLTAHRKIH 486 PF00096.16.ls: domain 10 of 13, from 492 to 514: score 19.6, E = 0.01 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C Cgk+F + + +rH+ +H KIAA1588 492 YECA-ACGKVFGDYLSRRRHMSVH 514 PF00096.16.ls: domain 11 of 13, from 520 to 542: score 32.9, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C +Cgk+F+++s+Lk+H+r+H KIAA1588 520 VECR-QCGKAFRNQSTLKTHMRSH 542 PF00096.16.fs: domain 11 of 13, from 520 to 542: score 30.9, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C +Cgk+F+++s+Lk+H+r+H KIAA1588 520 VECR-QCGKAFRNQSTLKTHMRSH 542 PF00096.16.fs: domain 12 of 13, from 548 to 570: score 29.7, E = 3.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs snL+ H+r+H KIAA1588 548 YECD-HCGKAFSIGSNLNVHRRIH 570 PF00096.16.ls: domain 12 of 13, from 548 to 570: score 31.7, E = 2.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs snL+ H+r+H KIAA1588 548 YECD-HCGKAFSIGSNLNVHRRIH 570 PF00096.16.ls: domain 13 of 13, from 576 to 598: score 34.8, E = 2.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+Fs++s+L++H +tH KIAA1588 576 YECL-VCGKAFSDHSSLRSHVKTH 598 PF00096.16.fs: domain 13 of 13, from 576 to 598: score 32.8, E = 6.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+Fs++s+L++H +tH KIAA1588 576 YECL-VCGKAFSDHSSLRSHVKTH 598 //