hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07045732/chunk_1/iprscan-20080502-07045732.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1587 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01454.9.ls MAGE family 469.4 4e-138 2 PF01454.9.fs MAGE family 466.1 4.1e-137 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01454.9.fs 1/3 532 702 .. 1 219 [] 303.7 3.1e-88 PF01454.9.ls 1/2 532 702 .. 1 219 [] 305.5 8.9e-89 PF01454.9.fs 2/3 786 906 .. 1 165 [. 114.0 4.1e-31 PF01454.9.ls 2/2 786 948 .. 1 219 [] 163.9 3.8e-46 PF01454.9.fs 3/3 915 948 .. 183 219 .] 48.4 7.2e-13 Alignments of top-scoring domains: PF01454.9.fs: domain 1 of 3, from 532 to 702: score 303.7, E = 3.1e-88 *->LVrflLskyqsKespItraeilkiVikeyknhFLpeIfkrAserLel L +flL+k+qsK pI+ +e+ +++ key+n+F peI++rA+++Le+ KIAA1587 532 LLQFLLVKDQSKY-PIRESEMREYIVKEYRNQF-PEILRRAAAHLEC 576 vFGleLkEvdpkrrskkatsqsqsssgshsYILvskLplsyrivlflwqs +F +eL+E+dp +h+YIL++kL++++ KIAA1587 577 IFRFELRELDPE---------------AHTYILLNKLGPVP--------- 602 sykdgselgddeglPktsesstdtdqlavktGLLmviLgvIfmnGncasE + l++++ P k+GLLm+iLg If+nGn a E KIAA1587 603 ---FEG-LEESPNGP--------------KMGLLMMILGQIFLNGNQAKE 634 eeLwefLnrlGlydgeehfifGldprkLitedlVkqkYLveyrqvpnsdP +e+we+L+r+G++ +++ +ifG +p++L+ ++V+q+YL yr+v ++ P KIAA1587 635 AEIWEMLWRMGVQRERRLSIFG-NPKRLLSVEFVWQRYL-DYRPVTDCKP 682 peyeFlWslGpRAyaEtskmkV<-* +eyeF+W GpR+++Et+kmk+ KIAA1587 683 VEYEFFW--GPRSHLETTKMKI 702 PF01454.9.ls: domain 1 of 2, from 532 to 702: score 305.5, E = 8.9e-89 *->LVrflLskyqsKespItraeilkiVikeyknhFLpeIfkrAserLel L +flL+k+qsK pI+ +e+ +++ key+n+F peI++rA+++Le+ KIAA1587 532 LLQFLLVKDQSKY-PIRESEMREYIVKEYRNQF-PEILRRAAAHLEC 576 vFGleLkEvdpkrrskkatsqsqsssgshsYILvskLplsyrivlflwqs +F +eL+E+dp +h+YIL++kL++++ KIAA1587 577 IFRFELRELDPE---------------AHTYILLNKLGPVP--------- 602 sykdgselgddeglPktsesstdtdqlavktGLLmviLgvIfmnGncasE + l++++ P k+GLLm+iLg If+nGn a E KIAA1587 603 ---FEG-LEESPNGP--------------KMGLLMMILGQIFLNGNQAKE 634 eeLwefLnrlGlydgeehfifGldprkLitedlVkqkYLveyrqvpnsdP +e+we+L+r+G++ +++ +ifG +p++L+ ++V+q+YL yr+v ++ P KIAA1587 635 AEIWEMLWRMGVQRERRLSIFG-NPKRLLSVEFVWQRYL-DYRPVTDCKP 682 peyeFlWslGpRAyaEtskmkV<-* +eyeF+W GpR+++Et+kmk+ KIAA1587 683 VEYEFFW--GPRSHLETTKMKI 702 PF01454.9.fs: domain 2 of 3, from 786 to 906: score 114.0, E = 4.1e-31 *->LVrflLskyqsKespItraeilkiVikeyknhFLpeIfkrAserLel LV+++L+ + K pI +++il ++ +e F p++++rA+++L KIAA1587 786 LVQLFLLMDSTKL-PIPKKGILYYIGRECSKVF-PDLLNRAARTLNH 830 vFGleLkEvdpkrrskkatsqsqsssgshsYILvskLplsyrivlflwqs v+G eL+ +dp+ +hsY L + ++++ KIAA1587 831 VYGTELVVLDPR---------------NHSYTLYNRREMEE--------- 856 sykdgselgddeglPktsesstdtdqlavktGLLmviLgvIfmnGncasE ++ + d++ +P + +Lm +L+ If+ Gn+a+E KIAA1587 857 ---TEE-IVDSPNRP--------------GNNFLMQVLSFIFIMGNHARE 888 eeLwefLnrlGlydgeeh<-* + +w fL+ lG+++g++h KIAA1587 889 SAVWAFLRGLGVQAGRKH 906 PF01454.9.ls: domain 2 of 2, from 786 to 948: score 163.9, E = 3.8e-46 *->LVrflLskyqsKespItraeilkiVikeyknhFLpeIfkrAserLel LV+++L+ + K pI +++il ++ +e F p++++rA+++L KIAA1587 786 LVQLFLLMDSTKL-PIPKKGILYYIGRECSKVF-PDLLNRAARTLNH 830 vFGleLkEvdpkrrskkatsqsqsssgshsYILvskLplsyrivlflwqs v+G eL+ +dp+ +hsY L + ++++ KIAA1587 831 VYGTELVVLDPR---------------NHSYTLYNRREMEE--------- 856 sykdgselgddeglPktsesstdtdqlavktGLLmviLgvIfmnGncasE ++ + d++ +P + +Lm +L+ If+ Gn+a+E KIAA1587 857 ---TEE-IVDSPNRP--------------GNNFLMQVLSFIFIMGNHARE 888 eeLwefLnrlGlydgeehfifGldprkLitedlVkqkYLveyrqvpnsdP + +w fL+ lG+++g++h +it + q+Y++ r vp+sdP KIAA1587 889 SAVWAFLRGLGVQAGRKH---------VITCRYLSQRYIDSLR-VPDSDP 928 peyeFlWslGpRAyaEtskmkV<-* ++yeF+W GpRA +Etskmk KIAA1587 929 VQYEFVW--GPRARLETSKMKA 948 PF01454.9.fs: domain 3 of 3, from 915 to 948: score 48.4, E = 7.2e-13 *->qkYLveyrqvpnsdPpeyeFlWslGpRAyaEtskmkV<-* q+Y++ r vp+sdP++yeF+W GpRA +Etskmk KIAA1587 915 QRYIDSLR-VPDSDPVQYEFVW--GPRARLETSKMKA 948 //