hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06564019/chunk_1/iprscan-20080502-06564019.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1582
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00627.21.fs UBA/TS-N domain                                 37.6    4.7e-10   1
PF00627.21.ls UBA/TS-N domain                                 39.6    9.8e-09   1
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     19.1     0.0023   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00627.21.fs   1/1     989  1028 ..     1    41 []    37.6  4.7e-10
PF00627.21.ls   1/1     989  1028 ..     1    41 []    39.6  9.8e-09
PF00076.12.ls   1/1    1566  1631 ..     1    74 []    19.1   0.0023

Alignments of top-scoring domains:
PF00627.21.fs: domain 1 of 1, from 989 to 1028: score 37.6, E = 4.7e-10
                   *->ideeavkqLreMTGfdreeakkALeatngnverAvewLleh<-*
                      i   ++kqL++M Gf+re a++AL+++n+n+++A+  Lle+   
    KIAA1582   989    IMSRLIKQLTDM-GFPREPAEEALKSNNMNLDQAMSALLEK    1028 

PF00627.21.ls: domain 1 of 1, from 989 to 1028: score 39.6, E = 9.8e-09
                   *->ideeavkqLreMTGfdreeakkALeatngnverAvewLleh<-*
                      i   ++kqL++M Gf+re a++AL+++n+n+++A+  Lle+   
    KIAA1582   989    IMSRLIKQLTDM-GFPREPAEEALKSNNMNLDQAMSALLEK    1028 

PF00076.12.ls: domain 1 of 1, from 1566 to 1631: score 19.1, E = 0.0023
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l  +NL+p ++ + L++l  ++Gp + + +          + G a V
    KIAA1582  1566    LVLRNLTPQIDGSTLRTLCLQHGPLITFHLNL--------TQGNAVV 1604 

                   eFedeedAekAldalnGkelggrelrv<-*
                   ++ ++e+A+kA ++l+   lg+ ++     
    KIAA1582  1605 RYSSKEEAAKAQKSLHMCVLGNTTILA    1631 

//