hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/smart.HMMs.bin
Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-06532199/chunk_1/iprscan-20080502-06532199.nocrc
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Query sequence: KIAA1580
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SM00369 144.9 8.6e-39 8
SM00409 58.3 9.8e-13 1
SM00408 41.2 1.4e-07 1
SM00013 28.5 0.0009 1
SM00406 27.7 0.0016 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SM00013 1/1 46 80 .. 1 38 [] 28.5 0.0009
SM00369 1/8 79 98 .. 1 24 [] 2.1 2.3e+02
SM00369 2/8 99 122 .. 1 24 [] 28.6 0.00084
SM00369 3/8 123 146 .. 1 24 [] 21.4 0.12
SM00369 4/8 147 170 .. 1 24 [] 27.7 0.0016
SM00369 5/8 196 217 .. 1 24 [] 5.3 93
SM00369 6/8 218 241 .. 1 24 [] 30.4 0.00025
SM00369 7/8 242 265 .. 1 24 [] 5.8 82
SM00369 8/8 266 289 .. 1 24 [] 23.5 0.029
SM00409 1/1 360 444 .. 1 58 [] 58.3 9.8e-13
SM00408 1/1 366 433 .. 1 56 [] 41.2 1.4e-07
SM00406 1/1 370 428 .. 1 76 [] 27.7 0.0016
Alignments of top-scoring domains:
SM00013: domain 1 of 1, from 46 to 80: score 28.5, E = 0.0009
*->qCPapCtCspdfgtaVdCsgrgLttlevPldlPadttl<-*
CP C Cs + + V C +++L+ evP +++ +t+l
KIAA1580 46 TCPSVCSCS-NQFSKVICVRKNLR--EVPDGISTNTRL 80
SM00369: domain 1 of 8, from 79 to 98: score 2.1, E = 2.3e+02
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
r L+L+ Nq++ + + F +
KIAA1580 79 ----RLLNLHENQIQIIKVNSFKH 98
SM00369: domain 2 of 8, from 99 to 122: score 28.6, E = 0.00084
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
L++L+ L Ls+N+++++ gaF+g
KIAA1580 99 LRHLEILQLSRNHIRTIEIGAFNG 122
SM00369: domain 3 of 8, from 123 to 146: score 21.4, E = 0.12
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
L nL +L L +N+Lt++P+gaF
KIAA1580 123 LANLNTLELFDNRLTTIPNGAFVY 146
SM00369: domain 4 of 8, from 147 to 170: score 27.7, E = 0.0016
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
L++L+eL L nN ++s+P+ aF+
KIAA1580 147 LSKLKELWLRNNPIESIPSYAFNR 170
SM00369: domain 5 of 8, from 196 to 217: score 5.3, E = 93
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
L+nLr L+L +L+++P+ + +
KIAA1580 196 LSNLRYLNLAMCNLREIPNLT--P 217
SM00369: domain 6 of 8, from 218 to 241: score 30.4, E = 0.00025
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
L +L eLdLs+N+L+++ pg Fqg
KIAA1580 218 LIKLDELDLSGNHLSAIRPGSFQG 241
SM00369: domain 7 of 8, from 242 to 265: score 5.8, E = 82
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
L +L++L q++ + ++aF++
KIAA1580 242 LMHLQKLWMIQSQIQVIERNAFDN 265
SM00369: domain 8 of 8, from 266 to 289: score 23.5, E = 0.029
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
L +L e +L +N+Lt LP+++F +
KIAA1580 266 LQSLVEINLAHNNLTLLPHDLFTP 289
SM00409: domain 1 of 1, from 360 to 444: score 58.3, E = 9.8e-13
*->pp.vtvkeGesvtLtC.as....titWy...................
p ++ v eG ++L+C+as++ ++++W +++++ +++ + +
KIAA1580 360 PAdLNVTEGMAAELKCrAStsltSVSWItpngtvmthgaykvriavl 406
....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
++++L+++nvt++D+ G YtC+++++ g++++ ++tL V+
KIAA1580 407 sdgtLNFtNVTVQDT---GMYTCMVSnsVGNTTA--SATLNVT 444
SM00408: domain 1 of 1, from 366 to 433: score 41.2, E = 1.4e-07
*->leGqsVtLtCpasgdpvpnItWlk..gkplp...........sgstL
eG +++L+C+as + + +++W+ ++g+ + ++ + + s++tL
KIAA1580 366 TEGMAAELKCRASTSLT-SVSWITpnGTVMThgaykvriavlSDGTL 411
tiknvsleDsGlYtCvArNsvg<-*
+++nv++ D G+YtC ++Nsvg
KIAA1580 412 NFTNVTVQDTGMYTCMVSNSVG 433
SM00406: domain 1 of 1, from 370 to 428: score 27.7, E = 0.0016
*->svtLsCkaSgftfyvsWvrqpPsstgkgkglewlgysykgRvtiskd
++L C+aS++ + vsW+ +g ++ yk R+ + d
KIAA1580 370 AAELKCRASTSLTSVSWITP--------NGTVMTHGAYKVRIAVLSD 408
tltraskndvsLtisnLrpeDtgtYyCar<-*
+L ++n+++ Dtg+Y+C +
KIAA1580 409 G---------TLNFTNVTVQDTGMYTCMV 428
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