hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06500287/chunk_1/iprscan-20080502-06500287.nocrc
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Query sequence: KIAA1578
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02825.10.fs WWE domain                                      48.1    3.5e-13   1
PF00627.21.fs UBA/TS-N domain                                 41.0    4.8e-11   1
PF02825.10.ls WWE domain                                      43.7    5.9e-10   1
PF00627.21.ls UBA/TS-N domain                                 43.0    9.4e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00627.21.fs   1/1      72   110 ..     1    41 []    41.0  4.8e-11
PF00627.21.ls   1/1      72   110 ..     1    41 []    43.0  9.4e-10
PF02809.10.fs   1/1     124   141 ..     1    18 []    10.8     0.14
PF02809.10.ls   1/1     124   141 ..     1    18 []    12.8     0.49
PF02825.10.ls   1/1     364   435 ..     1    89 []    43.7  5.9e-10
PF02825.10.fs   1/1     372   433 ..    16    87 ..    48.1  3.5e-13

Alignments of top-scoring domains:
PF00627.21.fs: domain 1 of 1, from 72 to 110: score 41.0, E = 4.8e-11
                   *->ideeavkqLreMTGfdreeakkALeatngnverAvewLleh<-*
                      +++++++qL++M Gf+re+a +AL +t   +e+A+e+Ll h   
    KIAA1578    72    VNQQQLQQLMDM-GFTREHAMEALLNTS-TMEQATEYLLTH    110  

PF00627.21.ls: domain 1 of 1, from 72 to 110: score 43.0, E = 9.4e-10
                   *->ideeavkqLreMTGfdreeakkALeatngnverAvewLleh<-*
                      +++++++qL++M Gf+re+a +AL +t   +e+A+e+Ll h   
    KIAA1578    72    VNQQQLQQLMDM-GFTREHAMEALLNTS-TMEQATEYLLTH    110  

PF02809.10.fs: domain 1 of 1, from 124 to 141: score 10.8, E = 0.14
                   *->mdEEedLqlALalSlqea<-*
                      m+EE++  +A+a+Sl      
    KIAA1578   124    MSEEDQMMRAIAMSLGQD    141  

PF02809.10.ls: domain 1 of 1, from 124 to 141: score 12.8, E = 0.49
                   *->mdEEedLqlALalSlqea<-*
                      m+EE++  +A+a+Sl      
    KIAA1578   124    MSEEDQMMRAIAMSLGQD    141  

PF02825.10.ls: domain 1 of 1, from 364 to 435: score 43.7, E = 5.9e-10
                   *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk
                       ++++sn        W+++  +d++g+W  Ys +++ +I  a++ ++
    KIAA1578   364    YLQSNSNN-------WRWF--DDRSGRWCSYSASNNSTIDSAWKSGE 401  

                   kGsVtleqvCsicGrpYtidfntmtQlreetgslsttReVrR<-*
                   +    ++ + +  +r+Yt+ f tm+Q++eetg    +R+V     
    KIAA1578   402 T---SVR-F-TAGRRRYTVQFTTMVQVNEETG---NRRPVML    435  

PF02825.10.fs: domain 1 of 1, from 372 to 433: score 48.1, E = 3.5e-13
                   *->WeyerSvddnggWrpYsphvsrlIEnayaakkkGsVtleqvCsicGr
                      W+++  +d++g+W  Ys +++ +I  a++ +++    ++ + +  +r
    KIAA1578   372    WRWF--DDRSGRWCSYSASNNSTIDSAWKSGET---SVR-F-TAGRR 411  

                   pYtidfntmtQlreetgslsttReV<-*
                   +Yt+ f tm+Q++eetg    +R+V   
    KIAA1578   412 RYTVQFTTMVQVNEETG---NRRPV    433  

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