# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj04270.fasta.huge -Q ../query/KIAA1578.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1578, 1202 aa vs ./tmplib.25089 library 1986303 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 8.2749+/-0.00667; mu= -1.5230+/- 0.451 mean_var=155.8789+/-36.380, 0's: 0 Z-trim: 1 B-trim: 6 in 1/39 Lambda= 0.102726 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0312 ( 3192 res) ff01724 (3192) 7553 1132.4 0 >>KIAA0312 ( 3192 res) ff01724 (3192 aa) initn: 4722 init1: 4677 opt: 7553 Z-score: 6047.3 bits: 1132.4 E(): 0 Smith-Waterman score: 7553; 98.168% identity (98.918% similar) in 1201 aa overlap (1-1198:81-1279) 10 20 30 KIAA15 QKAAFTCIKNLWNRKPLKVYGGRMAESMLA :::::::::::::::::::::::::::::: KIAA03 LESPHSLPAKLPGGVQNFPQFSALRFLVVTQKAAFTCIKNLWNRKPLKVYGGRMAESMLA 60 70 80 90 100 110 40 50 60 70 80 90 KIAA15 ILCHILRGEPVIRERLSKEKEGSRGEEDTGQEEGGSRREPQVNQQQLQQLMDMGFTREHA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 ILCHILRGEPVIRERLSKEKEGSRGEEDTGQEEGGSRREPQVNQQQLQQLMDMGFTREHA 120 130 140 150 160 170 100 110 120 130 140 150 KIAA15 MEALLNTSTMEQATEYLLTHPPPIMGGVVRDLSMSEEDQMMRAIAMSLGQDIPMDQRAES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 MEALLNTSTMEQATEYLLTHPPPIMGGVVRDLSMSEEDQMMRAIAMSLGQDIPMDQRAES 180 190 200 210 220 230 160 170 180 190 200 210 KIAA15 PEEVACRKEEEERKAREKQEEEEAKCLEKFQDADPLEQDELHTFTDTMLPGCFHLLDELP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 PEEVACRKEEEERKAREKQEEEEAKCLEKFQDADPLEQDELHTFTDTMLPGCFHLLDELP 240 250 260 270 280 290 220 230 240 250 260 270 KIAA15 DTVYRVCDLIMTAIKRNGADYRDMILKQVVNQVWEAADVLIKAALPLTTSDTKTVSEWIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 DTVYRVCDLIMTAIKRNGADYRDMILKQVVNQVWEAADVLIKAALPLTTSDTKTVSEWIS 300 310 320 330 340 350 280 290 300 310 320 330 KIAA15 QMATLPQASNLATRILLLTLLFEELKLPCAWVVESSGILNVLIKLLEVVQPCLQAAKEQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 QMATLPQASNLATRILLLTLLFEELKLPCAWVVESSGILNVLIKLLEVVQPCLQAAKEQK 360 370 380 390 400 410 340 350 360 370 380 390 KIAA15 EVQTPKWITPVLLLIDFYEKTAISSKRRAQMTKYLQSNSNNWRWFDDRSGRWCSYSASNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 EVQTPKWITPVLLLIDFYEKTAISSKRRAQMTKYLQSNSNNWRWFDDRSGRWCSYSASNN 420 430 440 450 460 470 400 410 420 430 440 450 KIAA15 STIDSAWKSGETSVRFTAGRRRYTVQFTTMVQVNEETGNRRPVMLTLLRVPRLNKNSKNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 STIDSAWKSGETSVRFTAGRRRYTVQFTTMVQVNEETGNRRPVMLTLLRVPRLNKNSKNS 480 490 500 510 520 530 460 470 480 490 500 510 KIAA15 NGQELEKTLEESKEMDIKRKENKGNDTPLALESTNTEKETSLEETKIGEILIQGLTEDMV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 NGQELEKTLEESKEMDIKRKENKGNDTPLALESTNTEKETSLEETKIGEILIQGLTEDMV 540 550 560 570 580 590 520 530 540 550 560 570 KIAA15 TVLIRACVSMLGVPVDPDTLHATLRLCLRLTRDHKYAMMFAELKSTRMILNLTQSSGFNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 TVLIRACVSMLGVPVDPDTLHATLRLCLRLTRDHKYAMMFAELKSTRMILNLTQSSGFNG 600 610 620 630 640 650 580 590 600 610 620 630 KIAA15 FTPLVTLLLRHIIEDPCTLRHTMEKVVRSAATSGAGSTTSGVVSGSLGSREINYILRVLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 FTPLVTLLLRHIIEDPCTLRHTMEKVVRSAATSGAGSTTSGVVSGSLGSREINYILRVLG 660 670 680 690 700 710 640 650 660 670 680 690 KIAA15 PAACRNPDIFTEVANCCIRIALPAPRGSGTASDDEFENLRIKGPNAVQLVKTTPLKPSPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 PAACRNPDIFTEVANCCIRIALPAPRGSGTASDDEFENLRIKGPNAVQLVKTTPLKPSPL 720 730 740 750 760 770 700 710 720 730 740 750 KIAA15 PVIPDTIKEVIYDMLNALAAYHAPEEADKSDPKPGVMTQEVGQLLQDMGDDVYQQYRSLT :::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::: KIAA03 PVIPDTIKEVIYDMLNALAAYHAPEE-DKSDPKPGVMTQEVGQLLQDMGDDVYQQYRSLT 780 790 800 810 820 760 770 780 790 800 810 KIAA15 RQSSDFDTQSGFSINSQVFAADGASTETSASGTSQGEASTPEESRDGKKDKEGDRASEEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 RQSSDFDTQSGFSINSQVFAADGASTETSASGTSQGEASTPEESRDGKKDKEGDRASEEG 830 840 850 860 870 880 820 830 840 850 860 870 KIAA15 KQKGKGSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 KQKGKGSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDH 890 900 910 920 930 940 880 890 900 910 920 930 KIAA15 LLPHTQNAEDKDTPALARLFLASLAAAGSGTDAQVALVNEVKAALGRALAMAESTEKHAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 LLPHTQNAEDKDTPALARLFLASLAAAGSGTDAQVALVNEVKAALGRALAMAESTEKHAR 950 960 970 980 990 1000 940 950 960 970 980 990 KIAA15 LQAVMCIISTIMESCPSTSSFYSSATAKTQHNGMNNIIRLFLKKGLVNDLARVPHSLDLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 LQAVMCIISTIMESCPSTSSFYSSATAKTQHNGMNNIIRLFLKKGLVNDLARVPHSLDLS 1010 1020 1030 1040 1050 1060 1000 1010 1020 1030 1040 1050 KIAA15 SPNMANTVNAALKPLETLSRIVNQPSSLFGSKSASSKNKSEQDAQGASQDSSSNQQDPGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 SPNMANTVNAALKPLETLSRIVNQPSSLFGSKSASSKNKSEQDAQGASQDSSSNQQDPGE 1070 1080 1090 1100 1110 1120 1060 1070 1080 1090 1100 1110 KIAA15 PGEAEVQEEDHDVTQTEVADGDIMDGEAETDSVVIAGQPEVLSSQEMQVENELEDLIDEL ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: KIAA03 PGEAEVQEEDHDVTHTEVADGDIMDGEAETDSVVIAGQPEVLSSQEMQVENELEDLIDEL 1130 1140 1150 1160 1170 1180 1120 1130 1140 1150 1160 1170 KIAA15 LERDGGSGNSTIIVSRSGEDESQEDVLMDEAPSNLSQASTLQANREDSMNILDPEDEEEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 LERDGGSGNSTIIVSRSGEDESQEDVLMDEAPSNLSQASTLQANREDSMNILDPEDEEEH 1190 1200 1210 1220 1230 1240 1180 1190 1200 KIAA15 TQERRIAA---EEKKKQDELKRIARELAEDDSILK :::. .. .: .::: .. .: ::: KIAA03 TQEEDSSGSNEDEDDSQDEEEE-EEEDEEDDQEDDEGEEGDEDDDDDGSEMELDEDYPDM 1250 1260 1270 1280 1290 1300 KIAA03 NASPLVRFERFDREDDLIIEFDNMFSSATDIPPSPGNIPTTHPLMVRHADHSSLTLGSGS 1310 1320 1330 1340 1350 1360 1202 residues in 1 query sequences 1986303 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:08:52 2008 done: Thu Dec 18 15:08:53 2008 Total Scan time: 0.740 Total Display time: 0.130 Function used was FASTA [version 34.26.5 April 26, 2007]