hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06400112/chunk_1/iprscan-20080502-06400112.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1572
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 112.3    5.3e-29   4
SM00225                                                  52.9    4.1e-11   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1      84   178 ..     1   114 []    52.9  4.1e-11
SM00355      1/4     324   346 ..     1    23 []    24.4    0.016
SM00355      2/4     349   371 ..     1    23 []    31.0  0.00016
SM00355      3/4     377   399 ..     1    23 []    29.9  0.00036
SM00355      4/4     405   428 ..     1    23 []    27.1   0.0025

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 84 to 178: score 52.9, E = 4.1e-11
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDvt+++++          +++   Hk v aa    Sp++++ f+ +
    KIAA1572    84    CDVTVLIDD---------IEVQG--HKIVFAAG---SPFLRDQFLLn 116  

                   ......ieldDeallievspeaFralLnflYt.kldlpeedvenveelLe
                   ++++ +i +         s e+ r lL  +Y++ l++pe   +++  +L 
    KIAA1572   117 dsrevkISILQ-------SSEVGRQLLLSCYSgVLEFPE---MELVNYLT 156  

                   lAdfldSYGqip.lvelCeefllknl<-*
                   +A+fl    q+ ++ve C+++l+k++   
    KIAA1572   157 AASFL----QMShIVERCTQALWKFI    178  

SM00355: domain 1 of 4, from 324 to 346: score 24.4, E = 0.016
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++Cp+ C ++f++ +++ +H+++H   
    KIAA1572   324    HQCPK-CTRVFRHLeNYANHLKMH    346  

SM00355: domain 2 of 4, from 349 to 371: score 31.0, E = 0.00016
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C + Cgk+f++k++L rHmrvH   
    KIAA1572   349    FMCLL-CGKTFTQKgNLHRHMRVH    371  

SM00355: domain 3 of 4, from 377 to 399: score 29.9, E = 0.00036
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C+i Cgk+fs+k +L+ H+  H   
    KIAA1572   377    FQCKI-CGKTFSQKcSLQDHLNLH    399  

SM00355: domain 4 of 4, from 405 to 428: score 27.1, E = 0.0025
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      +kC++ C+++f +k+ L++H+++ H   
    KIAA1572   405    HKCNY-CDMVFAHKpVLRKHLKqLH    428  

//