hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06400112/chunk_1/iprscan-20080502-06400112.nocrc
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Query sequence: KIAA1572
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         118.8    1.4e-32   4
PF00096.16.fs Zinc finger, C2H2 type                         110.9    3.4e-30   4
PF00651.21.fs BTB/POZ domain                                  74.0    3.7e-20   1
PF00651.21.ls BTB/POZ domain                                  75.8    1.3e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00651.21.fs   1/1      74   178 ..     1   135 []    74.0  3.7e-20
PF00651.21.ls   1/1      74   178 ..     1   135 []    75.8  1.3e-19
PF00096.16.ls   1/4     324   346 ..     1    24 []    27.1  5.7e-05
PF00096.16.fs   1/4     324   346 ..     1    24 []    25.1  5.1e-05
PF00096.16.ls   2/4     349   371 ..     1    24 []    36.2  1.1e-07
PF00096.16.fs   2/4     349   371 ..     1    24 []    34.2  2.8e-07
PF00096.16.ls   3/4     377   399 ..     1    24 []    31.8  2.2e-06
PF00096.16.fs   3/4     377   399 ..     1    24 []    29.8  3.5e-06
PF00096.16.ls   4/4     405   428 ..     1    24 []    23.7  0.00061

Alignments of top-scoring domains:
PF00651.21.fs: domain 1 of 1, from 74 to 178: score 74.0, E = 3.7e-20
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      +n+lr++ ++cDVt++++d         ++  HK v aa Sp+ ++ 
    KIAA1572    74    MNKLREENKFCDVTVLIDD--------IEVQGHKIVFAAGSPFLRDQ 112  

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F+ +       + ++v   i     s e+ ++lL  +Y+g l+++     
    KIAA1572   113 FLLN-------DSREVK--IS-ILQSSEVGRQLLLSCYSGVLEFP----- 147  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                         e  ++++L aA ++lq+ ++v+ C++ l k +   
    KIAA1572   148 ------EMELVNYLTAA-SFLQMSHIVERCTQALWKFI    178  

PF00651.21.ls: domain 1 of 1, from 74 to 178: score 75.8, E = 1.3e-19
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      +n+lr++ ++cDVt++++d         ++  HK v aa Sp+ ++ 
    KIAA1572    74    MNKLREENKFCDVTVLIDD--------IEVQGHKIVFAAGSPFLRDQ 112  

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F+ +       + ++v   i     s e+ ++lL  +Y+g l+++     
    KIAA1572   113 FLLN-------DSREVK--IS-ILQSSEVGRQLLLSCYSGVLEFP----- 147  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                         e  ++++L aA ++lq+ ++v+ C++ l k +   
    KIAA1572   148 ------EMELVNYLTAA-SFLQMSHIVERCTQALWKFI    178  

PF00096.16.ls: domain 1 of 4, from 324 to 346: score 27.1, E = 5.7e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++Cp +C ++F++ +n+ +Hl++H   
    KIAA1572   324    HQCP-KCTRVFRHLENYANHLKMH    346  

PF00096.16.fs: domain 1 of 4, from 324 to 346: score 25.1, E = 5.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++Cp +C ++F++ +n+ +Hl++H   
    KIAA1572   324    HQCP-KCTRVFRHLENYANHLKMH    346  

PF00096.16.ls: domain 2 of 4, from 349 to 371: score 36.2, E = 1.1e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C   Cgk+F++k+nL+rH+r+H   
    KIAA1572   349    FMCL-LCGKTFTQKGNLHRHMRVH    371  

PF00096.16.fs: domain 2 of 4, from 349 to 371: score 34.2, E = 2.8e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C   Cgk+F++k+nL+rH+r+H   
    KIAA1572   349    FMCL-LCGKTFTQKGNLHRHMRVH    371  

PF00096.16.ls: domain 3 of 4, from 377 to 399: score 31.8, E = 2.2e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cgk+Fs+k +L+ Hl+ H   
    KIAA1572   377    FQCK-ICGKTFSQKCSLQDHLNLH    399  

PF00096.16.fs: domain 3 of 4, from 377 to 399: score 29.8, E = 3.5e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cgk+Fs+k +L+ Hl+ H   
    KIAA1572   377    FQCK-ICGKTFSQKCSLQDHLNLH    399  

PF00096.16.ls: domain 4 of 4, from 405 to 428: score 23.7, E = 0.00061
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      +kC+ +C+ +F +k  L++Hl+  H   
    KIAA1572   405    HKCN-YCDMVFAHKPVLRKHLKQlH    428  

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