hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06261645/chunk_1/iprscan-20080502-06261645.nocrc
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Query sequence: KIAA1564
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 139.1    4.7e-37   1
SM00592                                                 130.9    1.4e-34   2
SM00490                                                  91.3    1.2e-22   1
SM00298                                                  73.9      2e-17   2

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00298      1/2     491   557 ..     1    63 []    43.7  2.5e-08
SM00298      2/2     573   631 ..     1    63 []    30.2  0.00029
SM00487      1/1     658   860 ..     1   219 []   139.1  4.7e-37
SM00490      1/1    1014  1098 ..     1    86 []    91.3  1.2e-22
SM00592      1/2    2161  2205 ..     1    50 []    82.6  4.9e-20
SM00592      2/2    2230  2270 ..     1    50 []    48.3  9.8e-10

Alignments of top-scoring domains:
SM00298: domain 1 of 2, from 491 to 557: score 43.7, E = 2.5e-08
                   *->eyeivEkIldhrw.......ekkkgeveYLVKWkGysysedtWEpee
                      + +iv+k+l +r  +++ ++      +e++VK+k+ysy +++W + +
    KIAA1564   491    DAAIVDKVLSMRIvkkelpsGQYTEAEEFFVKYKNYSYLHCEWATIS 537  

                   nleemLkkkncekkldeykkrek<-*
                   +le   k+k+ ++kl+++k++ +   
    KIAA1564   538 QLE---KDKRIHQKLKRFKTKMA    557  

SM00298: domain 2 of 2, from 573 to 631: score 30.2, E = 0.00029
                   *->eyeivEkIldhrw....ekkkgeveYLVKWkGysysedtWEpeenle
                      +y++v++Ild   + ++ +++ ++ YLVKW  ++y++ tWE  e++ 
    KIAA1564   573    DYVEVDRILDESHsidkDNGEPVIYYLVKWCSLPYEDSTWELKEDV- 618  

                   emLkkkncekkldeykkrek<-*
                          +e k+ e+k+ ++   
    KIAA1564   619 -------DEGKIREFKRIQS    631  

SM00487: domain 1 of 1, from 658 to 860: score 139.1, E = 4.7e-37
                   *->gf.klrpyQkeaipwlleg....rdvilaapTGsGKTlafllpllel
                      + ++lr+yQ+e+++wll +  +++++ila+++G+GKT+ + ++ l+ 
    KIAA1564   658    NRnQLREYQLEGVNWLLFNwynrQNCILADEMGLGKTI-QSIAFLQE 703  

                   lkkgkplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlk
                   +++ +        ++++Lv++P  + + +w++e++ +             
    KIAA1564   704 VYNVG-------IHGPFLVIAP-LSTITNWEREFNTWT----------EM 735  

                   vvglygG.sktke.keqlrklksgkt...........dilvtTpgrLldl
                   ++ +y+G+   +++  q  ++  ++++++  ++  + d l+tT +++l++
    KIAA1564   736 NTIVYHGsLA-SRqMIQQYEMYCKDSrgrlipgaykfDALITTFEMILSD 784  

                   l.ngkglsl.nldlvilDEaHrlldmgsggdhgfgdqle.llkrlpknrq
                    ++   l+  ++++vi+DEaHrl+        ++ ++l++ lk++    +
    KIAA1564   785 CpE---LREiEWRCVIIDEAHRLK--------NRNCKLLdSLKHM-DLEH 822  

                   rlllSATppeienllklflnlpelfpnpvfisvgf...tlepieqf<-*
                   ++ll++Tp  ++n+ +++++      +++f+ ++  ++ +e+++ f   
    KIAA1564   823 KVLLTGTP--LQNTVEELFS------LLHFLEPSQfpsESEFLKDF    860  

SM00490: domain 1 of 1, from 1014 to 1098: score 91.3, E = 1.2e-22
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgki...kv
                      d+l+++L ++     + + r++G+   + R++++++F k ++++ ++
    KIAA1564  1014    DILEDYLIQR----RYLYERIDGRVRGNLRQAAIDRFSKPDSdrfVF 1056 

                   LvaTdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   L++T+++++G++++++d+ I++d +w+p++++Q+  R++R+G   
    KIAA1564  1057 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG    1098 

SM00592: domain 1 of 2, from 2161 to 2205: score 82.6, E = 4.9e-20
                   *->dgeeRVpVinketGkkLtGddAPkakdLerWLeenPeyvvDlgevaP
                      d e+R+pVink +G++L+G+dAP++ +Le+WL+++Pe+     +v+P
    KIAA1564  2161    DLETRIPVINKVDGTLLVGEDAPRRAELEMWLQGHPEF-----AVDP 2202 

                   rsa<-*
                   r++   
    KIAA1564  2203 RFL    2205 

SM00592: domain 2 of 2, from 2230 to 2270: score 48.3, E = 9.8e-10
                   *->dgeeRVpVinketGkkLtGddAPkakdLerWLeenPeyvvDlgevaP
                       g+e+V+++n+++Gkk+    ++++++++r+L++++++     e+++
    KIAA1564  2230    LGMEPVQTANSRNGKKG----HHTETVFNRVLPGPIAP-----ESSK 2267 

                   rsa<-*
                   ++a   
    KIAA1564  2268 KRA    2270 

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