hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06243711/chunk_1/iprscan-20080502-06243711.nocrc
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Query sequence: KIAA1563
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00698                                                 126.2    3.5e-33   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00698    1/8    1048  1069 ..     1    22 []    34.6  1.3e-05
SM00698    2/8    1071  1092 ..     1    22 []    19.4      0.2
SM00698    3/8    1099  1120 ..     1    22 []    35.6  6.7e-06
SM00698    4/8    1122  1143 ..     1    22 []     6.8      9.4
SM00698    5/8    1150  1171 ..     1    22 []     5.3       15
SM00698    6/8    1174  1195 ..     1    22 []     6.2       11
SM00698    7/8    1197  1218 ..     1    22 []    11.4      2.3
SM00698    8/8    1220  1242 ..     1    22 []     6.9      9.3

Alignments of top-scoring domains:
SM00698: domain 1 of 8, from 1048 to 1069: score 34.6, E = 1.3e-05
                   *->drYeGeWvnGkrHGkGvytyad<-*
                      ++Y+G W  Gk+HG+Gv+ ++d   
    KIAA1563  1048    ATYDGRWLSGKPHGRGVLKWPD    1069 

SM00698: domain 2 of 8, from 1071 to 1092: score 19.4, E = 0.2
                   *->drYeGeWvnGkrHGkGvytyad<-*
                       +Y G ++nG+ +G+G y+ ++   
    KIAA1563  1071    KMYSGMFRNGLEDGYGEYRIPN    1092 

SM00698: domain 3 of 8, from 1099 to 1120: score 35.6, E = 6.7e-06
                   *->drYeGeWvnGkrHGkGvytyad<-*
                      d+Y G+W++Gk++G+Gvy ya+   
    KIAA1563  1099    DHYVGHWKEGKMCGQGVYSYAS    1120 

SM00698: domain 4 of 8, from 1122 to 1143: score 6.8, E = 9.4
                   *->drYeGeWvnGkrHGkGvytyad<-*
                       + eG +++++rHG+G ++      
    KIAA1563  1122    EVFEGCFQDNMRHGHGLLRSGK    1143 

SM00698: domain 5 of 8, from 1150 to 1171: score 5.3, E = 15
                   *->drYeGeWvnGkrHGkGvytyad<-*
                      ++ +G+Wv++k+ G+Gv+       
    KIAA1563  1150    SMFIGQWVMDKKAGYGVFDDIT    1171 

SM00698: domain 6 of 8, from 1174 to 1195: score 6.2, E = 11
                   *->drYeGeWvnGkrHGkGvytyad<-*
                       +Y G W+++ ++G+Gv +      
    KIAA1563  1174    EKYMGMWQDDVCQGNGVVVTQF    1195 

SM00698: domain 7 of 8, from 1197 to 1218: score 11.4, E = 2.3
                   *->drYeGeWvnGkrHGkGvytyad<-*
                        YeG+++ +k+ G+Gv+   d   
    KIAA1563  1197    LYYEGNFHLNKMMGNGVLLSED    1218 

SM00698: domain 8 of 8, from 1220 to 1242: score 6.9, E = 9.3
                   *->drYeGeWvnGkr.HGkGvytyad<-*
                       +YeGe+ ++   +GkG++t ++   
    KIAA1563  1220    TIYEGEFSDDWTlSGKGTLTMPN    1242 

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