hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-06243711/chunk_1/iprscan-20080502-06243711.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1563 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02493.10.ls MORN repeat 171.8 1.6e-48 8 PF02493.10.fs MORN repeat 159.2 1e-44 8 PF02204.8.fs Vacuolar sorting protein 9 (VPS9) domain 43.4 5.7e-13 1 PF00415.9.fs Regulator of chromosome condensation (RCC1) 46.2 1.1e-12 5 PF02204.8.ls Vacuolar sorting protein 9 (VPS9) domain 44.2 4.1e-10 1 PF00415.9.ls Regulator of chromosome condensation (RCC1) 34.0 4.9e-07 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02493.10.fs 1/8 1050 1072 .. 1 23 [] 33.6 3.7e-08 PF02493.10.ls 1/8 1050 1072 .. 1 23 [] 35.6 1.6e-07 PF02493.10.ls 2/8 1073 1095 .. 1 23 [] 22.8 0.0011 PF02493.10.fs 2/8 1073 1095 .. 1 23 [] 20.8 0.00013 PF02493.10.ls 3/8 1101 1123 .. 1 23 [] 36.9 6.6e-08 PF02493.10.fs 3/8 1101 1123 .. 1 23 [] 34.9 1.6e-08 PF02493.10.ls 4/8 1124 1146 .. 1 23 [] 15.6 0.047 PF02493.10.fs 4/8 1124 1146 .. 1 23 [] 13.6 0.013 PF02493.10.ls 5/8 1152 1174 .. 1 23 [] 15.1 0.057 PF02493.10.fs 5/8 1152 1167 .. 1 16 [. 13.7 0.012 PF02493.10.ls 6/8 1176 1198 .. 1 23 [] 9.0 0.42 PF02493.10.ls 7/8 1199 1221 .. 1 23 [] 20.2 0.0067 PF02493.10.fs 7/8 1199 1221 .. 1 23 [] 18.2 0.00065 PF02493.10.fs 8/8 1222 1245 .. 1 23 [] 14.6 0.0068 PF02493.10.ls 8/8 1222 1245 .. 1 23 [] 16.6 0.034 PF02204.8.fs 1/1 1553 1647 .. 1 110 [. 43.4 5.7e-13 PF02204.8.ls 1/1 1553 1657 .. 1 120 [] 44.2 4.1e-10 Alignments of top-scoring domains: PF02493.10.fs: domain 1 of 8, from 1050 to 1072: score 33.6, E = 3.7e-08 *->YeGewknGkrhGkGvytwadGdr<-* Y+G w Gk+hG+Gv++w+dG + KIAA1563 1050 YDGRWLSGKPHGRGVLKWPDGKM 1072 PF02493.10.ls: domain 1 of 8, from 1050 to 1072: score 35.6, E = 1.6e-07 *->YeGewknGkrhGkGvytwadGdr<-* Y+G w Gk+hG+Gv++w+dG + KIAA1563 1050 YDGRWLSGKPHGRGVLKWPDGKM 1072 PF02493.10.ls: domain 2 of 8, from 1073 to 1095: score 22.8, E = 0.0011 *->YeGewknGkrhGkGvytwadGdr<-* Y G ++nG+ +G+G y+ ++ + KIAA1563 1073 YSGMFRNGLEDGYGEYRIPNKAM 1095 PF02493.10.fs: domain 2 of 8, from 1073 to 1095: score 20.8, E = 0.00013 *->YeGewknGkrhGkGvytwadGdr<-* Y G ++nG+ +G+G y+ ++ + KIAA1563 1073 YSGMFRNGLEDGYGEYRIPNKAM 1095 PF02493.10.ls: domain 3 of 8, from 1101 to 1123: score 36.9, E = 6.6e-08 *->YeGewknGkrhGkGvytwadGdr<-* Y+G+wk+Gk++G+Gvy++a+G + KIAA1563 1101 YVGHWKEGKMCGQGVYSYASGEV 1123 PF02493.10.fs: domain 3 of 8, from 1101 to 1123: score 34.9, E = 1.6e-08 *->YeGewknGkrhGkGvytwadGdr<-* Y+G+wk+Gk++G+Gvy++a+G + KIAA1563 1101 YVGHWKEGKMCGQGVYSYASGEV 1123 PF02493.10.ls: domain 4 of 8, from 1124 to 1146: score 15.6, E = 0.047 *->YeGewknGkrhGkGvytwadGdr<-* +eG +++++rhG+G ++ + KIAA1563 1124 FEGCFQDNMRHGHGLLRSGKLTS 1146 PF02493.10.fs: domain 4 of 8, from 1124 to 1146: score 13.6, E = 0.013 *->YeGewknGkrhGkGvytwadGdr<-* +eG +++++rhG+G ++ + KIAA1563 1124 FEGCFQDNMRHGHGLLRSGKLTS 1146 PF02493.10.ls: domain 5 of 8, from 1152 to 1174: score 15.1, E = 0.057 *->YeGewknGkrhGkGvytwadGdr<-* + G+w+ +k+ G+Gv+ + + KIAA1563 1152 FIGQWVMDKKAGYGVFDDITRGE 1174 PF02493.10.fs: domain 5 of 8, from 1152 to 1167: score 13.7, E = 0.012 *->YeGewknGkrhGkGvy<-* + G+w+ +k+ G+Gv+ KIAA1563 1152 FIGQWVMDKKAGYGVF 1167 PF02493.10.ls: domain 6 of 8, from 1176 to 1198: score 9.0, E = 0.42 *->YeGewknGkrhGkGvytwadGdr<-* Y G w+++ ++G+Gv + G + KIAA1563 1176 YMGMWQDDVCQGNGVVVTQFGLY 1198 PF02493.10.ls: domain 7 of 8, from 1199 to 1221: score 20.2, E = 0.0067 *->YeGewknGkrhGkGvytwadGdr<-* YeG+++ +k+ G+Gv+ d + KIAA1563 1199 YEGNFHLNKMMGNGVLLSEDDTI 1221 PF02493.10.fs: domain 7 of 8, from 1199 to 1221: score 18.2, E = 0.00065 *->YeGewknGkrhGkGvytwadGdr<-* YeG+++ +k+ G+Gv+ d + KIAA1563 1199 YEGNFHLNKMMGNGVLLSEDDTI 1221 PF02493.10.fs: domain 8 of 8, from 1222 to 1245: score 14.6, E = 0.0068 *->YeGewknGk.rhGkGvytwadGdr<-* YeGe++++ + +GkG++t ++Gd+ KIAA1563 1222 YEGEFSDDWtLSGKGTLTMPNGDY 1245 PF02493.10.ls: domain 8 of 8, from 1222 to 1245: score 16.6, E = 0.034 *->YeGewknGk.rhGkGvytwadGdr<-* YeGe++++ + +GkG++t ++Gd+ KIAA1563 1222 YEGEFSDDWtLSGKGTLTMPNGDY 1245 PF02204.8.fs: domain 1 of 1, from 1553 to 1647: score 43.4, E = 5.7e-13 *->veeakqeLrelqYeyySPrdKlqcllrccklIfnalknakgeneaPT + +a++ L +++ +++P+dKl+++++ + I + +++a+ KIAA1563 1553 FASAVECLQQIS-TTFTPSDKLKVIQQTFEEI-SQSVLASLHEDF-- 1595 DPmCGYRGepsADdfLPlLiYvilkanpphLlsnieYisrFlnpPisrlL + s Dd+ P++ Yv+l+a+ + L+s++ +i+++ +p l KIAA1563 1596 --------LWSMDDLFPVFLYVVLRARIRNLGSEVHLIEDLMDP--Y-LQ 1634 sGEegYYLTsLea<-* +GE+g +T+L+a KIAA1563 1635 HGEQGIMFTTLKA 1647 PF02204.8.ls: domain 1 of 1, from 1553 to 1657: score 44.2, E = 4.1e-10 *->veeakqeLrelqYeyySPrdKlqcllrccklIfnalknakgeneaPT + +a++ L +++ +++P+dKl+++++ + I + +++a+ KIAA1563 1553 FASAVECLQQIS-TTFTPSDKLKVIQQTFEEI-SQSVLASLHEDF-- 1595 DPmCGYRGepsADdfLPlLiYvilkanpphLlsnieYisrFlnpPisrlL + s Dd+ P++ Yv+l+a+ + L+s++ +i+++ +p l KIAA1563 1596 --------LWSMDDLFPVFLYVVLRARIRNLGSEVHLIEDLMDP--Y-LQ 1634 sGEegYYLTsLeaAlaFIkslde<-* +GE+g +T+L+a + I + KIAA1563 1635 HGEQGIMFTTLKACYYQIQREKL 1657 //