hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06210501/chunk_1/iprscan-20080502-06210501.nocrc
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Query sequence: KIAA1561
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00248                                                 120.5    1.9e-31   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00248    1/6      33    63 ..     1    30 []     2.4  2.2e+03
SM00248    2/6      67    96 ..     1    30 []    21.7      0.1
SM00248    3/6     100   129 ..     1    30 []    20.2      0.3
SM00248    4/6     133   162 ..     1    30 []    27.1   0.0024
SM00248    5/6     166   195 ..     1    30 []    26.0   0.0052
SM00248    6/6     199   228 ..     1    30 []    23.1    0.038

Alignments of top-scoring domains:
SM00248: domain 1 of 6, from 33 to 63: score 2.4, E = 2.2e+03
                   *->dGrTpLHlAaen.gnlevvklLldkgadina<-*
                        +  L+ Aae+++ ++v  +L +kg+++ +   
    KIAA1561    33    KYDDRLMKAAERgDVEKVTSILAKKGVNPGK    63   

SM00248: domain 2 of 6, from 67 to 96: score 21.7, E = 0.1
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +Gr+ +H+  ++gnle+++++l +g+di+    
    KIAA1561    67    EGRSVFHVVTSKGNLECLNAILIHGVDITT    96   

SM00248: domain 3 of 6, from 100 to 129: score 20.2, E = 0.3
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       Gr++LHlAa++g+  +++ Ll+++   +    
    KIAA1561   100    AGRNALHLAAKYGHALCLQKLLQYNCPTEH    129  

SM00248: domain 4 of 6, from 133 to 162: score 27.1, E = 0.0024
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +GrT+LH Aa+ + ++ ++lL d+ga++na   
    KIAA1561   133    QGRTALHDAAMADCPSSIQLLCDHGASVNA    162  

SM00248: domain 5 of 6, from 166 to 195: score 26.0, E = 0.0052
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      dGrTpL lA +  ++ +++lL+d+gad+n    
    KIAA1561   166    DGRTPLVLATQMSRPTICQLLIDRGADVNS    195  

SM00248: domain 6 of 6, from 199 to 228: score 23.1, E = 0.038
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      ++rT+L+l +e+g  + v+ L+++gadi +   
    KIAA1561   199    QNRTALMLGCEYGCRDAVEVLIKNGADISL    228  

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