hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-06210501/chunk_1/iprscan-20080502-06210501.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1561 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00023.20.ls Ankyrin repeat 138.5 1.6e-38 6 PF00023.20.fs Ankyrin repeat 129.8 6.9e-36 6 PF04508.3.ls Viral A-type inclusion protein repeat 44.3 3.9e-10 9 PF04508.3.fs Viral A-type inclusion protein repeat 32.1 7.5e-08 7 PF02370.7.ls M protein repeat 20.5 0.0055 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.ls 1/6 33 66 .. 1 33 [] 0.3 27 PF00023.20.fs 1/6 38 66 .. 6 33 .] 1.5 20 PF00023.20.fs 2/6 67 99 .. 1 33 [] 9.9 0.089 PF00023.20.ls 2/6 67 99 .. 1 33 [] 11.9 0.55 PF00023.20.ls 3/6 100 132 .. 1 33 [] 21.5 0.0028 PF00023.20.fs 3/6 100 132 .. 1 33 [] 19.5 0.00019 PF00023.20.ls 4/6 133 165 .. 1 33 [] 38.0 2.9e-08 PF00023.20.fs 4/6 133 165 .. 1 33 [] 36.0 4.6e-09 PF00023.20.fs 5/6 166 198 .. 1 33 [] 36.5 3.3e-09 PF00023.20.ls 5/6 166 198 .. 1 33 [] 38.5 2.1e-08 PF00023.20.ls 6/6 199 231 .. 1 33 [] 28.3 2.5e-05 PF00023.20.fs 6/6 199 231 .. 1 33 [] 26.3 2.4e-06 PF04508.3.ls 3/9 811 833 .. 1 23 [] 20.5 0.0056 Alignments of top-scoring domains: PF00023.20.ls: domain 1 of 6, from 33 to 66: score 0.3, E = 27 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* + L+ Aa+rg++e v+ l ++G ++ d KIAA1561 33 KYDDRLMKAAERGDVEKVTSILAkKGVNPGKLDV 66 PF00023.20.fs: domain 1 of 6, from 38 to 66: score 1.5, E = 20 *->LHlAalrgnlevvklLls.qGAdlnaqdd<-* L+ Aa+rg++e v+ l ++G ++ d KIAA1561 38 LMKAAERGDVEKVTSILAkKGVNPGKLDV 66 PF00023.20.fs: domain 2 of 6, from 67 to 99: score 9.9, E = 0.089 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G++ H+ ++gnle++ l +G d+ d KIAA1561 67 EGRSVFHVVTSKGNLECLNAILIHGVDITTSDT 99 PF00023.20.ls: domain 2 of 6, from 67 to 99: score 11.9, E = 0.55 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G++ H+ ++gnle++ l +G d+ d KIAA1561 67 EGRSVFHVVTSKGNLECLNAILIHGVDITTSDT 99 PF00023.20.ls: domain 3 of 6, from 100 to 132: score 21.5, E = 0.0028 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ +LHlAa++g++ +++ Ll++ + + d KIAA1561 100 AGRNALHLAAKYGHALCLQKLLQYNCPTEHADL 132 PF00023.20.fs: domain 3 of 6, from 100 to 132: score 19.5, E = 0.00019 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ +LHlAa++g++ +++ Ll++ + + d KIAA1561 100 AGRNALHLAAKYGHALCLQKLLQYNCPTEHADL 132 PF00023.20.ls: domain 4 of 6, from 133 to 165: score 38.0, E = 2.9e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+LH Aa+ ++++ ++lL ++GA++na+d KIAA1561 133 QGRTALHDAAMADCPSSIQLLCDHGASVNAKDV 165 PF00023.20.fs: domain 4 of 6, from 133 to 165: score 36.0, E = 4.6e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+LH Aa+ ++++ ++lL ++GA++na+d KIAA1561 133 QGRTALHDAAMADCPSSIQLLCDHGASVNAKDV 165 PF00023.20.fs: domain 5 of 6, from 166 to 198: score 36.5, E = 3.3e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+TPL lA ++ ++ +++lL+++GAd+n +d+ KIAA1561 166 DGRTPLVLATQMSRPTICQLLIDRGADVNSRDK 198 PF00023.20.ls: domain 5 of 6, from 166 to 198: score 38.5, E = 2.1e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+TPL lA ++ ++ +++lL+++GAd+n +d+ KIAA1561 166 DGRTPLVLATQMSRPTICQLLIDRGADVNSRDK 198 PF00023.20.ls: domain 6 of 6, from 199 to 231: score 28.3, E = 2.5e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +T+L+l +++g+ + v+ L+++GAd+ + d KIAA1561 199 QNRTALMLGCEYGCRDAVEVLIKNGADISLLDA 231 PF00023.20.fs: domain 6 of 6, from 199 to 231: score 26.3, E = 2.4e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +T+L+l +++g+ + v+ L+++GAd+ + d KIAA1561 199 QNRTALMLGCEYGCRDAVEVLIKNGADISLLDA 231 PF04508.3.ls: domain 3 of 9, from 811 to 833: score 20.5, E = 0.0056 *->rEldrlRrrIsdLekqLsdcrrn<-* E+ l+++I +L+kqLs+ +++ KIAA1561 811 KEIIALKSNIVELKKQLSELKKK 833 //