hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-06174484/chunk_1/iprscan-20080502-06174484.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1559 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 406.1 4.7e-119 13 PF00096.16.fs Zinc finger, C2H2 type 380.5 2.4e-111 13 PF01352.17.fs KRAB box 100.7 5.2e-28 1 PF01352.17.ls KRAB box 102.7 9.9e-28 1 PF01096.9.fs Transcription factor S-II (TFIIS) 75.2 1.4e-22 12 PF01286.9.fs XPA protein N-terminal 42.1 3.1e-11 11 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 17 57 .. 1 41 [] 100.7 5.2e-28 PF01352.17.ls 1/1 17 57 .. 1 41 [] 102.7 9.9e-28 PF00096.16.ls 1/13 183 205 .. 1 24 [] 33.6 6.6e-07 PF00096.16.fs 1/13 183 205 .. 1 24 [] 31.6 1.3e-06 PF00096.16.ls 2/13 211 233 .. 1 24 [] 31.3 3.2e-06 PF00096.16.fs 2/13 211 233 .. 1 24 [] 29.3 4.7e-06 PF00096.16.ls 3/13 239 261 .. 1 24 [] 33.4 7.3e-07 PF00096.16.fs 3/13 239 261 .. 1 24 [] 31.4 1.4e-06 PF00096.16.ls 4/13 267 289 .. 1 24 [] 34.5 3.3e-07 PF00096.16.fs 4/13 267 289 .. 1 24 [] 32.6 7.3e-07 PF00096.16.ls 5/13 295 317 .. 1 24 [] 33.6 6.5e-07 PF00096.16.fs 5/13 295 317 .. 1 24 [] 31.6 1.3e-06 PF00096.16.ls 6/13 323 345 .. 1 24 [] 23.5 0.00072 PF00096.16.ls 7/13 351 373 .. 1 24 [] 27.6 4.1e-05 PF00096.16.fs 7/13 351 373 .. 1 24 [] 25.6 3.9e-05 PF00096.16.fs 8/13 379 401 .. 1 24 [] 33.5 4.4e-07 PF00096.16.ls 8/13 379 401 .. 1 24 [] 35.4 1.8e-07 PF00096.16.fs 9/13 407 429 .. 1 24 [] 26.7 2.1e-05 PF00096.16.ls 9/13 407 429 .. 1 24 [] 28.6 2e-05 PF00096.16.ls 10/13 435 457 .. 1 24 [] 33.6 6.4e-07 PF00096.16.fs 10/13 435 457 .. 1 24 [] 31.6 1.2e-06 PF00096.16.ls 11/13 463 485 .. 1 24 [] 29.1 1.4e-05 PF00096.16.fs 11/13 463 485 .. 1 24 [] 27.1 1.6e-05 PF00096.16.fs 12/13 491 513 .. 1 24 [] 28.4 8e-06 PF00096.16.ls 12/13 491 513 .. 1 24 [] 30.3 6.1e-06 PF00096.16.fs 13/13 519 541 .. 1 24 [] 29.6 3.9e-06 PF00096.16.ls 13/13 519 541 .. 1 24 [] 31.6 2.6e-06 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 17 to 57: score 100.7, E = 5.2e-28 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF+DVa+dF+qEEWe LdpaQr+LYrdVM+ENysn +Slg KIAA1559 17 VTFRDVAIDFSQEEWEFLDPAQRDLYRDVMWENYSNFISLG 57 PF01352.17.ls: domain 1 of 1, from 17 to 57: score 102.7, E = 9.9e-28 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF+DVa+dF+qEEWe LdpaQr+LYrdVM+ENysn +Slg KIAA1559 17 VTFRDVAIDFSQEEWEFLDPAQRDLYRDVMWENYSNFISLG 57 PF00096.16.ls: domain 1 of 13, from 183 to 205: score 33.6, E = 6.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+F r+s+L +Hlr+H KIAA1559 183 YECK-ECRKTFIRRSTLSQHLRIH 205 PF00096.16.fs: domain 1 of 13, from 183 to 205: score 31.6, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+F r+s+L +Hlr+H KIAA1559 183 YECK-ECRKTFIRRSTLSQHLRIH 205 PF00096.16.ls: domain 2 of 13, from 211 to 233: score 31.3, E = 3.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg++F+++++L rH + H KIAA1559 211 YKCK-ECGQAFRQRAHLIRHHKLH 233 PF00096.16.fs: domain 2 of 13, from 211 to 233: score 29.3, E = 4.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg++F+++++L rH + H KIAA1559 211 YKCK-ECGQAFRQRAHLIRHHKLH 233 PF00096.16.ls: domain 3 of 13, from 239 to 261: score 33.4, E = 7.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +L++H+r H KIAA1559 239 YECK-ECGKAFTVLQELTQHQRLH 261 PF00096.16.fs: domain 3 of 13, from 239 to 261: score 31.4, E = 1.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +L++H+r H KIAA1559 239 YECK-ECGKAFTVLQELTQHQRLH 261 PF00096.16.ls: domain 4 of 13, from 267 to 289: score 34.5, E = 3.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ + +L rH+r+H KIAA1559 267 YECK-ECGKAFRVHQQLARHQRIH 289 PF00096.16.fs: domain 4 of 13, from 267 to 289: score 32.6, E = 7.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ + +L rH+r+H KIAA1559 267 YECK-ECGKAFRVHQQLARHQRIH 289 PF00096.16.ls: domain 5 of 13, from 295 to 317: score 33.6, E = 6.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+F++ +L+rH+r H KIAA1559 295 YECK-DCGKTFRQCTHLTRHQRLH 317 PF00096.16.fs: domain 5 of 13, from 295 to 317: score 31.6, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+F++ +L+rH+r H KIAA1559 295 YECK-DCGKTFRQCTHLTRHQRLH 317 PF00096.16.ls: domain 6 of 13, from 323 to 345: score 23.5, E = 0.00072 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +L+ H+++H KIAA1559 323 YECK-ECGKAFVCGPDLRVHQKIH 345 PF00096.16.ls: domain 7 of 13, from 351 to 373: score 27.6, E = 4.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +L+ H+ +H KIAA1559 351 YECK-ECGKAFRICQQLTVHQSIH 373 PF00096.16.fs: domain 7 of 13, from 351 to 373: score 25.6, E = 3.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +L+ H+ +H KIAA1559 351 YECK-ECGKAFRICQQLTVHQSIH 373 PF00096.16.fs: domain 8 of 13, from 379 to 401: score 33.5, E = 4.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ + +L rH+r+H KIAA1559 379 YECK-ECGKTFRLRQQLVRHQRIH 401 PF00096.16.ls: domain 8 of 13, from 379 to 401: score 35.4, E = 1.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ + +L rH+r+H KIAA1559 379 YECK-ECGKTFRLRQQLVRHQRIH 401 PF00096.16.fs: domain 9 of 13, from 407 to 429: score 26.7, E = 2.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +C k+Fs+ s+L +H+ +H KIAA1559 407 YECM-ECWKTFSSYSQLISHQSIH 429 PF00096.16.ls: domain 9 of 13, from 407 to 429: score 28.6, E = 2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +C k+Fs+ s+L +H+ +H KIAA1559 407 YECM-ECWKTFSSYSQLISHQSIH 429 PF00096.16.ls: domain 10 of 13, from 435 to 457: score 33.6, E = 6.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ s+L++H+ +H KIAA1559 435 YECE-ECGKAFRLLSQLTQHQSIH 457 PF00096.16.fs: domain 10 of 13, from 435 to 457: score 31.6, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ s+L++H+ +H KIAA1559 435 YECE-ECGKAFRLLSQLTQHQSIH 457 PF00096.16.ls: domain 11 of 13, from 463 to 485: score 29.1, E = 1.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k F+ s+L++H+ +H KIAA1559 463 YECK-ECRKPFRLLSQLTQHQSIH 485 PF00096.16.fs: domain 11 of 13, from 463 to 485: score 27.1, E = 1.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k F+ s+L++H+ +H KIAA1559 463 YECK-ECRKPFRLLSQLTQHQSIH 485 PF00096.16.fs: domain 12 of 13, from 491 to 513: score 28.4, E = 8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ s L++H+r+H KIAA1559 491 YECK-ECGKAFRLYSFLTQHQRIH 513 PF00096.16.ls: domain 12 of 13, from 491 to 513: score 30.3, E = 6.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ s L++H+r+H KIAA1559 491 YECK-ECGKAFRLYSFLTQHQRIH 513 PF00096.16.fs: domain 13 of 13, from 519 to 541: score 29.6, E = 3.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F+++s+L++H+++H KIAA1559 519 YKCK-ECKKAFRQHSHLTQHQKIH 541 PF00096.16.ls: domain 13 of 13, from 519 to 541: score 31.6, E = 2.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F+++s+L++H+++H KIAA1559 519 YKCK-ECKKAFRQHSHLTQHQKIH 541 //