# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh18848.fasta.huge -Q ../query/KIAA1557.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1557, 806 aa vs ./tmplib.25089 library 1986699 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 8.0185+/-0.00825; mu= 3.8313+/- 0.559 mean_var=280.3433+/-67.652, 0's: 0 Z-trim: 3 B-trim: 9 in 1/39 Lambda= 0.076600 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0181 ( 2079 res) ha02522s1 (2079) 223 39.0 0.0064 >>KIAA0181 ( 2079 res) ha02522s1 (2079 aa) initn: 139 init1: 83 opt: 223 Z-score: 144.3 bits: 39.0 E(): 0.0064 Smith-Waterman score: 261; 23.485% identity (50.606% similar) in 660 aa overlap (1-606:462-1051) 10 20 KIAA15 VQQPQQVQMQVQPQQSNA---GVGQPAS-- :.: :: :: .: :.: : ::.: KIAA01 TPLQQPHLTNKSPASSPSSFQQGSPASSPTVNQTQQ-QMGPRPPQNNPLPQGFQQPVSSP 440 450 460 470 480 490 30 40 50 60 70 KIAA15 GESSLIKQLLLP------KRGPSTPGGKLILPA----PQ-IPPPNNARAPSPQVVY-QVA :.. ...: .: .. : . : . . :. :. .:: .: .:. . :: KIAA01 GRNPMVQQGNVPPNFMVMQQQPPNQGPQSLHPGLGGMPKRLPPGFSAGQANPNFMQGQVP 500 510 520 530 540 550 80 90 100 110 120 130 KIAA15 SNQAAGFGVQGQTPAQQLLVGQQNVQLVPSAMPPSGGVQTVPISN-LQILPGPLISNSPA :. :. : .: : :: ..: ::: .:: . : .: .:. :: .:. KIAA01 STTATTPGNSG---APQLQANQ-NVQ-------HAGGQGAGPPQNQMQVSHGPPNMMQPS 560 570 580 590 140 150 160 170 KIAA15 TI-FQGTSGNQVTITV-VP--NTSFAPATVSQGNATQL------IAPAG---ITMSGT-- . ..:. .:: . : :: : : . .:: .:: :.:. . ..:: KIAA01 LMGIHGNMNNQQAGTSGVPQVNLSNMQGQPQQGPPSQLMGMHQQIVPSQGQMVQQQGTLN 600 610 620 630 640 650 180 190 200 210 220 230 KIAA15 -QTGVGLP-VQTLPATQ--ASPAGQS---SCTTATPPFKGDKIICQKEEEAKEATGLHVH :. . : .: .: : ..: .:. : ::: ... :. . . . KIAA01 PQNPMILSRAQLMPQGQMMVNPPSQNLGPSPQRMTPP---KQMLSQQGPQMMAPHNQMMG 660 670 680 690 700 710 240 250 260 270 280 KIAA15 ER-KIEVMENPSCRRGATNTSNGDTKE-NEMHVGSLLNGRKYSDSSLPPSNSGKIQSETN . .. ...:: .. :: .:. .. : .. .... : . :. .:.. . :. KIAA01 PQGQVLLQQNPMIEQIMTNQMQGNKQQFNTQNQSNVMPGPAQIMRGPTPNMQGNMVQFTG 720 730 740 750 760 770 290 300 310 320 330 340 KIAA15 QCSLISNGPSLELGENGASGKQNSEQIDMQDIKSDLRKPLVNGICDFDKGDGSHLSKNIP : : . : ..: ... :. . .: . :: : : . :.... KIAA01 QMS------GQMLPQQGPVNNSPSQVMGIQG--QVLRPP----------GPSPHMAQQHG 780 790 800 810 350 360 370 380 390 400 KIAA15 NHKTSNHVGNGEISPMEPQGTLDITQQDTAKGDQLERISNGPVLTLGGSSVSSIQEASNA . :. . .. .: : : :.. :.: . : .. :.:.:. . .... KIAA01 DPATTAN-NDVSLSQMMP----DVSIQQTN-------MVPPHVQAMQGNSASGNHFSGHG 820 830 840 850 860 410 420 430 440 450 460 KIAA15 AT--QQFSGTDLLNG-PLASSLNSDVPQQRPSVVVSPHST----TSVIQGHQIIAVPDSG . :::. :: .. . : : .. ...:: . ... :: . ... KIAA01 MSFNAPFSGAP--NGNQMSCGQNPGFPVNKDVTLTSPLLVNLLQSDISAGHFGVNNKQNN 870 880 890 900 910 920 470 480 490 500 510 KIAA15 SKVSHSPALSSDVRSTNGTAECKTVK-RPA--EDTDRETVAGIPNKVGVRIVTISDPNNA ..... . .. :. . .: ::: :..:. .:.. :. . . : :. KIAA01 TNANKPKKKKPPRKKKNSQQDLNTPDTRPAGLEEADQPP---LPGEQGISLDN-SGPKLP 930 940 950 960 970 980 520 530 540 550 560 570 KIAA15 GCSATMVAVPAGADPSTVAKVAIESAVQQK--QQHPPTYVQNVVPQNTPMPPSPAVQVQG : : : :: . :.:. :: :: .:.:.: :.::. : : KIAA01 EFSNR----PPGY-PS--------QPVEQRPLQQMPPQLMQHVAP--PPQPPQQQPQPQ- 990 1000 1010 1020 580 590 600 610 620 630 KIAA15 QPNSSQPSPFSGSSQPGDPMRKPGQNFMCLWQSCKKWFQTPSQVFYHAATEHGGKDVYPG :...:: : ::: . ... :. : . KIAA01 LPQQQQPPP---PSQPQSQQQQQQQQQMMMMLMMQQDPKSVRLPVSQNVHPPRGPLNPDS 1030 1040 1050 1060 1070 1080 806 residues in 1 query sequences 1986699 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:07:59 2008 done: Thu Dec 18 15:08:00 2008 Total Scan time: 0.590 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]