hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-06123754/chunk_1/iprscan-20080502-06123754.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1556 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00409 687.9 2.9e-202 17 SM00408 414.0 8e-120 16 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/17 17 98 .. 1 58 [] 17.5 1.9 SM00409 2/17 108 187 .. 1 58 [] 51.2 1.3e-10 SM00408 1/16 114 180 .. 1 56 [] 33.7 2.6e-05 SM00409 3/17 197 276 .. 1 58 [] 44.5 1.5e-08 SM00408 2/16 203 269 .. 1 56 [] 20.8 0.037 SM00409 4/17 286 367 .. 1 58 [] 36.1 4.8e-06 SM00408 3/16 292 360 .. 1 56 [] 2.9 2.7 SM00409 5/17 377 458 .. 1 58 [] 35.6 6.6e-06 SM00408 4/16 383 449 .. 1 56 [] 32.6 5.3e-05 SM00409 6/17 466 545 .. 1 58 [] 47.0 2.5e-09 SM00408 5/16 472 538 .. 1 56 [] 26.2 0.0046 SM00409 7/17 555 633 .. 1 58 [] 32.4 6.2e-05 SM00408 6/16 561 626 .. 1 56 [] 20.3 0.042 SM00409 8/17 643 721 .. 1 58 [] 40.7 2e-07 SM00408 7/16 649 714 .. 1 56 [] 27.4 0.002 SM00409 9/17 731 809 .. 1 58 [] 34.4 1.5e-05 SM00408 8/16 737 802 .. 1 56 [] 15.3 0.14 SM00409 10/17 819 897 .. 1 58 [] 41.6 1.1e-07 SM00408 9/16 825 890 .. 1 56 [] 34.8 1.2e-05 SM00409 11/17 907 985 .. 1 58 [] 39.8 3.6e-07 SM00408 10/16 913 978 .. 1 56 [] 20.4 0.041 SM00409 12/17 995 1073 .. 1 58 [] 42.6 5.3e-08 SM00408 11/16 1001 1066 .. 1 56 [] 25.2 0.0088 SM00409 13/17 1083 1161 .. 1 58 [] 47.2 2.2e-09 SM00408 12/16 1089 1154 .. 1 56 [] 31.1 0.00015 SM00409 14/17 1171 1249 .. 1 58 [] 47.7 1.5e-09 SM00408 13/16 1177 1242 .. 1 56 [] 33.5 2.8e-05 SM00409 15/17 1259 1337 .. 1 58 [] 42.6 5.3e-08 SM00408 14/16 1265 1330 .. 1 56 [] 23.4 0.02 SM00409 16/17 1347 1425 .. 1 58 [] 42.8 4.6e-08 SM00408 15/16 1353 1418 .. 1 56 [] 34.9 1.1e-05 SM00409 17/17 1435 1513 .. 1 58 [] 44.3 1.6e-08 SM00408 16/16 1441 1506 .. 1 56 [] 31.5 0.00011 Alignments of top-scoring domains: SM00409: domain 1 of 17, from 17 to 98: score 17.5, E = 1.9 *->pp.vtvkeGesvtLtC.as......titWy................. ++++v eGes +++C s+ + ++ W+ ++++ +++++ + +++ KIAA1556 17 LKtMEVLEGESCSFECvLShesasdPAMWTvggktvgsssrfqatrq 63 .....LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* +++ L+++++ p+D+ G+ + ++ +s + L+V+ KIAA1556 64 grkyiLVVrEAAPSDA---GEVVFSVR--GLTS--KASLIVR 98 SM00409: domain 2 of 17, from 108 to 187: score 51.2, E = 1.3e-10 *->pp.vtvkeGesvtLtC.as....titWy................... ++++v +Ge+v+L+C+ s ++ ++W+++++ +++++ + ++ KIAA1556 108 LEdQWVAPGEDVELRCeLSragtPVHWLkdrkairksqkydvvcegt 154 ...LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* L+I+++++ D+ G+YtC+++ +s ++ L+V+ KIAA1556 155 mamLVIrGASLKDA---GEYTCEVE--ASKS--TASLHVE 187 SM00408: domain 1 of 16, from 114 to 180: score 33.7, E = 2.6e-05 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt +G++V+L+C+ s + +p ++Wlk+ k + ++++ + +++ L KIAA1556 114 APGEDVELRCELSRAGTP-VHWLKdRKAIRksqkydvvcegTMAMLV 159 iknvsleDsGlYtCvArNsvg<-* i+ +sl D+G+YtC+++ s++ KIAA1556 160 IRGASLKDAGEYTCEVEASKS 180 SM00409: domain 3 of 17, from 197 to 276: score 44.5, E = 1.5e-08 *->pp.vtvkeGesvtLtC.as....titWy................... ++ v e +++++tC+ +++ t+tW+++ + ++++++++ + KIAA1556 197 LTnLQVEEKGTAVFTCkTEhpaaTVTWRkgllelrasgkhqpsqegl 243 ...LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* + +LtI+ ++++Ds tYtC +a+s ++L V+ KIAA1556 244 tlrLTIsALEKADS---DTYTCDIG--QAQS--RAQLLVQ 276 SM00408: domain 2 of 16, from 203 to 269: score 20.8, E = 0.037 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt +e +++++tC+ + p++++tW+k+ +l ++++++++++ +Lt KIAA1556 203 EEKGTAVFTCK-TEHPAATVTWRKgLLELRasgkhqpsqegLTLRLT 248 iknvsleDsGlYtCvArNsvg<-* i+ +++Ds +YtC + + KIAA1556 249 ISALEKADSDTYTCDIGQAQS 269 SM00409: domain 4 of 17, from 286 to 367: score 36.1, E = 4.8e-06 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++v v+eG+s+t++C++s+ + ++W+ ++++ + + + + ++ KIAA1556 286 LEdVDVQEGSSATFRCrISpanyePVHWFldktplhanelneidaqp 332 .....LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* ++ + Lt++++ + Ds Gt + +a ++ + ++ L+V+ KIAA1556 333 ggyhvLTLrQLALKDS---GTIYFEAG--DQRA--SAALRVT 367 SM00408: domain 3 of 16, from 292 to 360: score 2.9, E = 2.7 *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL +eG s+t++C+ s + ++W+ + +pl ++ ++ + ++++ L KIAA1556 292 QEGSSATFRCRISPANYEPVHWFLdKTPLHanelneidaqpgGYHVL 338 tiknvsleDsGlYtCvArNsvg<-* t++ +l DsG+ +A KIAA1556 339 TLRQLALKDSGTIYFEAGDQRA 360 SM00409: domain 5 of 17, from 377 to 458: score 35.6, E = 6.6e-06 *->pp.vtvkeGesvtLtC.as....titWy................... + t eGe++tL C+ s+ + + W++++++ +++ + + ++ ++ KIAA1556 377 LTdATITEGEDLTLVCeTStcdiPVCWTkdgktlrgsarcqlshegh 423 ...LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* + +L I+++t++Ds G Y C+a + + ss ++++ + KIAA1556 424 raqLLItGATLQDS---GRYKCEAGGACSSS--IVRVHAR 458 SM00408: domain 4 of 16, from 383 to 449: score 32.6, E = 5.3e-05 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt eG+++tL C+ + + + W+k+gk l ++ + + ++++++ L KIAA1556 383 TEGEDLTLVCE-TSTCDIPVCWTKdGKTLRgsarcqlshegHRAQLL 428 iknvsleDsGlYtCvArNsvg<-* i+ ++l DsG+Y C+A ++ + KIAA1556 429 ITGATLQDSGRYKCEAGGACS 449 SM00409: domain 6 of 17, from 466 to 545: score 47.0, E = 2.5e-09 *->pp.vtvkeGesvtLtC.as....titWy................... ++++v eG+ +tL+C s+ ++W +++ +++++ + ++ + KIAA1556 466 LKdLEVLEGGAATLRCvLSsvaaPVKWCygnnvlrpgdkyslrqega 512 ...LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* L+++n++p+Ds G Y C +++ ++tLtV+ KIAA1556 513 mleLVVrNLRPQDS---GRYSCSFG--DQTT--SATLTVT 545 SM00408: domain 5 of 16, from 472 to 538: score 26.2, E = 0.0046 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt leG+++tL+C + ++ ++W +++ l ++++ + ++++ +L KIAA1556 472 LEGGAATLRCV-LSSVAAPVKWCYgNNVLRpgdkyslrqegAMLELV 517 iknvsleDsGlYtCvArNsvg<-* ++n ++ DsG+Y+C+ KIAA1556 518 VRNLRPQDSGRYSCSFGDQTT 538 SM00409: domain 7 of 17, from 555 to 633: score 32.4, E = 6.2e-05 *->pp.vtvkeGesvtLtC.as...titWy.................... ++ ++ eG ++tL+C+ s+ + W++++ + +++++ ++++ KIAA1556 555 LRnKEATEGATATLRCeLSkaaPVEWRkgsetlrdgdryclrqdgam 601 ..LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* L+I+++ + D+ ++Y C+ + ++ Lt++ KIAA1556 602 ceLQIrGLAMVDA---AEYSCVCG--EERT--SASLTIR 633 SM00408: domain 6 of 16, from 561 to 626: score 20.3, E = 0.042 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt eG ++tL+C+ + ++ + W+k+++ l ++++ ++++ +L+ KIAA1556 561 TEGATATLRCE--LSKAAPVEWRKgSETLRdgdryclrqdgAMCELQ 605 iknvsleDsGlYtCvArNsvg<-* i+ ++ D+ +Y+Cv + KIAA1556 606 IRGLAMVDAAEYSCVCGEERT 626 SM00409: domain 8 of 17, from 643 to 721: score 40.7, E = 2e-07 *->pp.vtvkeGesvtLtC.as...titWy.................... ++++ eG ++tL+C+ s+ + W++++ + +++++++ ++++ KIAA1556 643 LRhQESIEGATATLRCeLSkaaPVEWRkgreslrdgdrhslrqdgav 689 ..LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* L+I ++ ++D+ G+Y C+ + ++tLtV+ KIAA1556 690 ceLQIcGLAVADA---GEYSCVCG--EERT--SATLTVK 721 SM00408: domain 7 of 16, from 649 to 714: score 27.4, E = 0.002 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt +eG ++tL+C+ + ++ + W+k+ ++l ++++++ ++++ +L+ KIAA1556 649 IEGATATLRCE--LSKAAPVEWRKgRESLRdgdrhslrqdgAVCELQ 693 iknvsleDsGlYtCvArNsvg<-* i +++D+G+Y+Cv + KIAA1556 694 ICGLAVADAGEYSCVCGEERT 714 SM00409: domain 9 of 17, from 731 to 809: score 34.4, E = 1.5e-05 *->pp.vtvkeGesvtLtC.as...titWy.................... ++ +++eG ++ L C+ s+ + W++++ + +++++ ++ +++ KIAA1556 731 LRnEEAVEGATAMLWCeLSkvaPVEWRkgpenlrdgdryilrqegtr 777 ..LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* L+I ++ ++D+ G+Y C+ + ++tLt++ KIAA1556 778 ceLQIcGLAMADA---GEYLCVCG--QERT--SATLTIR 809 SM00408: domain 8 of 16, from 737 to 802: score 15.3, E = 0.14 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt eG ++ L C+ + v+ + W+k+ + l ++++ ++++++ +L+ KIAA1556 737 VEGATAMLWCE--LSKVAPVEWRKgPENLRdgdryilrqegTRCELQ 781 iknvsleDsGlYtCvArNsvg<-* i +++D+G+Y Cv + KIAA1556 782 ICGLAMADAGEYLCVCGQERT 802 SM00409: domain 10 of 17, from 819 to 897: score 41.6, E = 1.1e-07 *->pp.vtvkeGesvtLtC.as...titWy.................... ++++++eG +++L+C+ ++ + W++++ + +++++ + ++++++ KIAA1556 819 VKnQEAREGATAVLQCeLNsaaPVEWRkgsetlrdgdryslrqdgtk 865 ..LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* L+I+++ ++D+ G+Y C+ + ++ LtV+ KIAA1556 866 ceLQIrGLAMADT---GEYSCVCG--QERT--SAMLTVR 897 SM00408: domain 9 of 16, from 825 to 890: score 34.8, E = 1.2e-05 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt +eG +++L+C+ + ++ + W+k+++ l ++++ + ++++++ +L+ KIAA1556 825 REGATAVLQCE--LNSAAPVEWRKgSETLRdgdryslrqdgTKCELQ 869 iknvsleDsGlYtCvArNsvg<-* i+ +++D G+Y+Cv + KIAA1556 870 IRGLAMADTGEYSCVCGQERT 890 SM00409: domain 11 of 17, from 907 to 985: score 39.8, E = 3.6e-07 *->pp.vtvkeGesvtLtC.as...titWy.................... ++ ++ eG +++L+C+ s+ + W++++ + +++++++ ++++ + KIAA1556 907 LRnEEATEGATAVLRCeLSkmaPVEWWkghetlrdgdrhslrqdgar 953 ..LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* L+I+++ +eD+ G+Y C+ + ++ LtV+ KIAA1556 954 ceLQIrGLVAEDA---GEYLCMCG--KERT--SAMLTVR 985 SM00408: domain 10 of 16, from 913 to 978: score 20.4, E = 0.041 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt eG +++L+C+ + + + W k+ + l ++++++ ++++ + +L+ KIAA1556 913 TEGATAVLRCE--LSKMAPVEWWKgHETLRdgdrhslrqdgARCELQ 957 iknvsleDsGlYtCvArNsvg<-* i+ eD+G+Y C + KIAA1556 958 IRGLVAEDAGEYLCMCGKERT 978 SM00409: domain 12 of 17, from 995 to 1073: score 42.6, E = 5.3e-08 *->pp.vtvkeGesvtLtC.as...titWy.................... ++ ++ eG+++tL C+ s+ + W++++ + +++++++ ++++++ KIAA1556 995 LRnEEATEGDTATLWCeLSkaaPVEWRkghetlrdgdrhslrqdgsr 1041 ..LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* L+I+++ + D+ G+Y C+ + ++tLtV+ KIAA1556 1042 ceLQIrGLAVVDA---GEYSCVCG--QERT--SATLTVR 1073 SM00408: domain 11 of 16, from 1001 to 1066: score 25.2, E = 0.0088 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt eG+++tL C+ + ++ + W+k+ + l ++++++ ++++s+ +L+ KIAA1556 1001 TEGDTATLWCE--LSKAAPVEWRKgHETLRdgdrhslrqdgSRCELQ 1045 iknvsleDsGlYtCvArNsvg<-* i+ ++ D+G+Y+Cv + KIAA1556 1046 IRGLAVVDAGEYSCVCGQERT 1066 SM00409: domain 13 of 17, from 1083 to 1161: score 47.2, E = 2.2e-09 *->pp.vtvkeGesvtLtC.as...titWy.................... ++++++eG +++L+C+ s+ + W++++ + +++++ + ++++++ KIAA1556 1083 VKnQEAREGATAVLQCeLSkaaPVEWRkgsetlrggdryslrqdgtr 1129 ..LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* L+I++++++D+ G+Y C+ + ++tLtV+ KIAA1556 1130 ceLQIhGLSVADT---GEYSCVCG--QERT--SATLTVR 1161 SM00408: domain 12 of 16, from 1089 to 1154: score 31.1, E = 0.00015 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt +eG +++L+C+ + ++ + W+k+++ l ++++ + ++++++ +L+ KIAA1556 1089 REGATAVLQCE--LSKAAPVEWRKgSETLRggdryslrqdgTRCELQ 1133 iknvsleDsGlYtCvArNsvg<-* i s++D G+Y+Cv + KIAA1556 1134 IHGLSVADTGEYSCVCGQERT 1154 SM00409: domain 14 of 17, from 1171 to 1249: score 47.7, E = 1.5e-09 *->pp.vtvkeGesvtLtC.as...titWy.................... ++ +++eG ++tL+C+ s+ + W++++ + +++++ + ++++++ KIAA1556 1171 LKtKEASEGATATLQCeLSkvaPVEWKkgpetlrdggryslkqdgtr 1217 ..LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* L+I++++++D+ G+Y C+ + ++tLtV+ KIAA1556 1218 ceLQIhDLSVADA---GEYSCMCG--QERT--SATLTVR 1249 SM00408: domain 13 of 16, from 1177 to 1242: score 33.5, E = 2.8e-05 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt eG ++tL+C+ + v+ + W+k+ + l ++++ + ++++++ +L+ KIAA1556 1177 SEGATATLQCE--LSKVAPVEWKKgPETLRdggryslkqdgTRCELQ 1221 iknvsleDsGlYtCvArNsvg<-* i + s++D+G+Y+C + KIAA1556 1222 IHDLSVADAGEYSCMCGQERT 1242 SM00409: domain 15 of 17, from 1259 to 1337: score 42.6, E = 5.3e-08 *->pp.vtvkeGesvtLtC.as...titWy.................... ++ +++eG ++tL+C+ s+ + W+++ +++++ + ++++ KIAA1556 1259 LRnEEAMEGATATLQCeLSkaaPVEWRkglealrdgdkyslrqdgav 1305 ..LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* L+I+++ ++D G+Y C+ + ++tLtV+ KIAA1556 1306 ceLQIhGLAMADN---GVYSCVCG--QERT--SATLTVR 1337 SM00408: domain 14 of 16, from 1265 to 1330: score 23.4, E = 0.02 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt eG ++tL+C+ + ++ + W+k+ + l ++++ + ++++ +L+ KIAA1556 1265 MEGATATLQCE--LSKAAPVEWRKgLEALRdgdkyslrqdgAVCELQ 1309 iknvsleDsGlYtCvArNsvg<-* i +++D G+Y+Cv + KIAA1556 1310 IHGLAMADNGVYSCVCGQERT 1330 SM00409: domain 16 of 17, from 1347 to 1425: score 42.8, E = 4.6e-08 *->pp.vtvkeGesvtLtC.as...titWy.................... +++ + eG +vtL+C+ + + W++++++ +++++ + ++++++ KIAA1556 1347 MRnQKATEGATVTLQCkLRkaaPVEWRkgpntlkdgdryslkqdgts 1393 ..LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* L+I+++ +D+ G+Y C + + ++tLtV+ KIAA1556 1394 ceLQIrGLVIADA---GEYSCICE--QERT--SATLTVR 1425 SM00408: domain 15 of 16, from 1353 to 1418: score 34.9, E = 1.1e-05 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt eG +VtL+C+ + ++ + W+k+ l ++++ + ++++++ +L+ KIAA1556 1353 TEGATVTLQCK--LRKAAPVEWRKgPNTLKdgdryslkqdgTSCELQ 1397 iknvsleDsGlYtCvArNsvg<-* i+ +D+G+Y+C+ + + KIAA1556 1398 IRGLVIADAGEYSCICEQERT 1418 SM00409: domain 17 of 17, from 1435 to 1513: score 44.3, E = 1.6e-08 *->pp.vtvkeGesvtLtC.as...titWy.................... +++++ eG +++L+C+ s+ + W++++ + +++++ + ++++++ KIAA1556 1435 VRnHEATEGATAVLQCeLSkaaPVEWRkgsetlrdgdryslrqdgtr 1481 ..LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* L+I+++ +eD+ G+Y C+ + ++tLtV+ KIAA1556 1482 ceLQIrGLAVEDT---GEYLCVCG--QERT--SATLTVR 1513 SM00408: domain 16 of 16, from 1441 to 1506: score 31.5, E = 0.00011 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt eG +++L+C+ + ++ + W+k+++ l ++++ + ++++++ +L+ KIAA1556 1441 TEGATAVLQCE--LSKAAPVEWRKgSETLRdgdryslrqdgTRCELQ 1485 iknvsleDsGlYtCvArNsvg<-* i+ ++eD G+Y Cv + KIAA1556 1486 IRGLAVEDTGEYLCVCGQERT 1506 //