hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06090124/chunk_1/iprscan-20080502-06090124.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1554
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           28.5    1.2e-09   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           30.3    6.3e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00097.15.fs   1/1     110   148 ..     1    50 []    28.5  1.2e-09
PF00097.15.ls   1/1     110   148 ..     1    50 []    30.3  6.3e-06

Alignments of top-scoring domains:
PF00097.15.fs: domain 1 of 1, from 110 to 148: score 28.5, E = 1.2e-09
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C ICl+ +k+p+      lpC H       C  Cl+ w+  s+++ C
    KIAA1554   110    CSICLGDAKDPV-----CLPCDHV-----HCLRCLRAWFA-SEQMIC 145  

                   plC<-*
                   p C   
    KIAA1554   146 PYC    148  

PF00097.15.ls: domain 1 of 1, from 110 to 148: score 30.3, E = 6.3e-06
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C ICl+ +k+p+      lpC H       C  Cl+ w+  s+++ C
    KIAA1554   110    CSICLGDAKDPV-----CLPCDHV-----HCLRCLRAWFA-SEQMIC 145  

                   plC<-*
                   p C   
    KIAA1554   146 PYC    148  

//