# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh17222.fasta.huge -Q ../query/KIAA1554.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1554, 1320 aa
 vs ./tmplib.25089 library

1986185 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.5268+/-0.00494; mu= 20.4547+/- 0.336
 mean_var=101.6217+/-24.206, 0's: 0 Z-trim: 7  B-trim: 0 in 0/40
 Lambda= 0.127227

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1404  ( 1925 res)   eg01672                    (1925)  167 42.7 0.00071
KIAA0517  ( 792 res)   hg00752                     ( 792)  153 39.6  0.0025


>>KIAA1404  ( 1925 res)   eg01672                         (1925 aa)
 initn: 224 init1: 158 opt: 167  Z-score: 161.4  bits: 42.7 E(): 0.00071
Smith-Waterman score: 167;  47.619% identity (64.286% similar) in 42 aa overlap (609-650:1847-1888)

      580       590       600       610       620       630        
KIAA15 KNLAFSPATMAHAFLPTMPEDLLAQARRWKGLERVHWYTCPNGHPCSVGECGRPMEQSIC
                                     :  : ::. : :::   .:.::  ::.. :
KIAA14 QEKMEALKATLPCSGLGISEEERVQIVSAIGYPRGHWFKCRNGHIYVIGDCGGAMERGTC
       1820      1830      1840      1850      1860      1870      

      640       650       660       670       680       690        
KIAA15 IDCHAPIGGIDHKPRDGFHLVKDKADRTQTGHVLGNPQRRDVVTCDRGLPPVVFLLIRLL
        ::.  ::: .:                                                
KIAA14 PDCKEVIGGTNHTLERSNQLASEMDGAQHAAWSDTANNLMNFEEIQGMM           
       1880      1890      1900      1910      1920                

>>KIAA0517  ( 792 res)   hg00752                          (792 aa)
 initn: 121 init1: 121 opt: 153  Z-score: 151.5  bits: 39.6 E(): 0.0025
Smith-Waterman score: 153;  33.735% identity (54.217% similar) in 83 aa overlap (79-155:38-120)

       50        60        70        80        90       100        
KIAA15 GTESRVPELQGLVTEHVFLLDKCLRENSDVKTHGPFEAVMRTLCECKETASKTLSRFGIQ
                                     :: ::     :   :  .  : .. ..  :
KIAA05 ELSPQIGGGWLWSSMHRSGRYGTQQQRAGSKTAGPPCQWSRMASEGTNIPSPVVRQIDKQ
        10        20        30        40        50        60       

        110       120       130       140           150       160  
KIAA15 --PCSICLGDAKDPVCLPCDHVHCLRCLRAWFASEQMI--CPYC--LTALPDEFSPAVSQ
          :::::   :.:  ::: :. : :::. .. ....   :: :   . ::..       
KIAA05 FLICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCRQTSILPEKGVAALQN
        70        80        90       100       110       120       

            170       180       190       200       210       220  
KIAA15 AHREAIEKHARFRQMCNSFFVDLVSTICFKDNAPPEKEVIESLLSLLFVQKGRLRDAAQR
                                                                   
KIAA05 NFFITNLMDVLQRTPGSNAEESSILETVTAVAAGKPLSCPNHDGNVMEFYCQSCETAMCR
       130       140       150       160       170       180       




1320 residues in 1 query   sequences
1986185 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:07:51 2008 done: Thu Dec 18 15:07:52 2008
 Total Scan time:  0.790 Total Display time:  0.060

Function used was FASTA [version 34.26.5 April 26, 2007]