hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06053760/chunk_1/iprscan-20080502-06053760.nocrc
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Query sequence: KIAA1552
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04500.7.ls FLYWCH zinc finger domain                      465.9   4.8e-137   5
PF04500.7.fs FLYWCH zinc finger domain                      456.8   9.2e-136   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04500.7.fs   1/5     126   184 ..     1    69 []    95.7  4.9e-28
PF04500.7.ls   1/5     126   184 ..     1    69 []    97.5  3.6e-26
PF04500.7.ls   2/5     283   341 ..     1    69 []    85.7  1.4e-22
PF04500.7.fs   2/5     283   341 ..     1    69 []    83.8  1.7e-24
PF04500.7.ls   3/5     431   489 ..     1    69 []   100.5  4.5e-27
PF04500.7.fs   3/5     431   489 ..     1    69 []    98.7  6.2e-29
PF04500.7.fs   4/5     519   577 ..     1    69 []    93.4  2.5e-27
PF04500.7.ls   4/5     519   577 ..     1    69 []    95.2  1.8e-25
PF04500.7.fs   5/5     610   668 ..     1    69 []    85.1  7.1e-25
PF04500.7.ls   5/5     610   668 ..     1    69 []    87.0  5.5e-23

Alignments of top-scoring domains:
PF04500.7.fs: domain 1 of 5, from 126 to 184: score 95.7, E = 4.9e-28
                   *->fltsakGgelLvfdghlykfdkrsaesdkkyWrCikkrdrkntCkaR
                      fl++++Gg+lLv++++lyk++k+++  dk+yW+C+  ++++ +C++R
    KIAA1552   126    FLRTPFGGRLLVLESFLYKQEKAVG--DKVYWKCR--QHAELGCRGR 168  

                   iiTtgdedGairvirvngeHnH<-*
                   +iT+g       +++v+++H+H   
    KIAA1552   169 AITRG------LRATVMRGHCH    184  

PF04500.7.ls: domain 1 of 5, from 126 to 184: score 97.5, E = 3.6e-26
                   *->fltsakGgelLvfdghlykfdkrsaesdkkyWrCikkrdrkntCkaR
                      fl++++Gg+lLv++++lyk++k+++  dk+yW+C+  ++++ +C++R
    KIAA1552   126    FLRTPFGGRLLVLESFLYKQEKAVG--DKVYWKCR--QHAELGCRGR 168  

                   iiTtgdedGairvirvngeHnH<-*
                   +iT+g       +++v+++H+H   
    KIAA1552   169 AITRG------LRATVMRGHCH    184  

PF04500.7.ls: domain 2 of 5, from 283 to 341: score 85.7, E = 1.4e-22
                   *->fltsakGgelLvfdghlykfdkrsaesdkkyWrCikkrdrkntCkaR
                      fl++  Gg++Lv++++lyk++k+++  dk+yW+C+  +++  +C++R
    KIAA1552   283    FLRTCYGGSFLVHESFLYKREKAVG--DKVYWTCR--DHALHGCRSR 325  

                   iiTtgdedGairvirvngeHnH<-*
                   +iT+g       +++v+++H+H   
    KIAA1552   326 AITQG------QRVTVMRGHCH    341  

PF04500.7.fs: domain 2 of 5, from 283 to 341: score 83.8, E = 1.7e-24
                   *->fltsakGgelLvfdghlykfdkrsaesdkkyWrCikkrdrkntCkaR
                      fl++  Gg++Lv++++lyk++k+++  dk+yW+C+  +++  +C++R
    KIAA1552   283    FLRTCYGGSFLVHESFLYKREKAVG--DKVYWTCR--DHALHGCRSR 325  

                   iiTtgdedGairvirvngeHnH<-*
                   +iT+g       +++v+++H+H   
    KIAA1552   326 AITQG------QRVTVMRGHCH    341  

PF04500.7.ls: domain 3 of 5, from 431 to 489: score 100.5, E = 4.5e-27
                   *->fltsakGgelLvfdghlykfdkrsaesdkkyWrCikkrdrkntCkaR
                      fl++++Gg++Lv++++ly+++k+++  +k+yW+C+  ++++++C++R
    KIAA1552   431    FLKTPLGGSFLVYESFLYRREKAAG--EKVYWTCR--DQARMGCRSR 473  

                   iiTtgdedGairvirvngeHnH<-*
                   +iT+g      r+++v+++H+H   
    KIAA1552   474 AITQG------RRVTVMRGHCH    489  

PF04500.7.fs: domain 3 of 5, from 431 to 489: score 98.7, E = 6.2e-29
                   *->fltsakGgelLvfdghlykfdkrsaesdkkyWrCikkrdrkntCkaR
                      fl++++Gg++Lv++++ly+++k+++  +k+yW+C+  ++++++C++R
    KIAA1552   431    FLKTPLGGSFLVYESFLYRREKAAG--EKVYWTCR--DQARMGCRSR 473  

                   iiTtgdedGairvirvngeHnH<-*
                   +iT+g      r+++v+++H+H   
    KIAA1552   474 AITQG------RRVTVMRGHCH    489  

PF04500.7.fs: domain 4 of 5, from 519 to 577: score 93.4, E = 2.5e-27
                   *->fltsakGgelLvfdghlykfdkrsaesdkkyWrCikkrdrkntCkaR
                      fl++++Gg++Lv++++ly+++k+++  +k+yW+C+  ++++++C++R
    KIAA1552   519    FLKTPLGGSFLVYESFLYRREKAAG--EKVYWTCR--DQARMGCRSR 561  

                   iiTtgdedGairvirvngeHnH<-*
                   +iT+g      r++ v++ H+H   
    KIAA1552   562 AITQG------RRVMVMRRHCH    577  

PF04500.7.ls: domain 4 of 5, from 519 to 577: score 95.2, E = 1.8e-25
                   *->fltsakGgelLvfdghlykfdkrsaesdkkyWrCikkrdrkntCkaR
                      fl++++Gg++Lv++++ly+++k+++  +k+yW+C+  ++++++C++R
    KIAA1552   519    FLKTPLGGSFLVYESFLYRREKAAG--EKVYWTCR--DQARMGCRSR 561  

                   iiTtgdedGairvirvngeHnH<-*
                   +iT+g      r++ v++ H+H   
    KIAA1552   562 AITQG------RRVMVMRRHCH    577  

PF04500.7.fs: domain 5 of 5, from 610 to 668: score 85.1, E = 7.1e-25
                   *->fltsakGgelLvfdghlykfdkrsaesdkkyWrCikkrdrkntCkaR
                      fl++ +Gg++Lv++++ly+ +k+++  +k+yW C+  ++++ +C++R
    KIAA1552   610    FLRTSLGGRFLVHESFLYRKEKAAG--EKVYWMCR--DQARLGCRSR 652  

                   iiTtgdedGairvirvngeHnH<-*
                   +iT+g       +i v+++H+H   
    KIAA1552   653 AITQG------HRIMVMRSHCH    668  

PF04500.7.ls: domain 5 of 5, from 610 to 668: score 87.0, E = 5.5e-23
                   *->fltsakGgelLvfdghlykfdkrsaesdkkyWrCikkrdrkntCkaR
                      fl++ +Gg++Lv++++ly+ +k+++  +k+yW C+  ++++ +C++R
    KIAA1552   610    FLRTSLGGRFLVHESFLYRKEKAAG--EKVYWMCR--DQARLGCRSR 652  

                   iiTtgdedGairvirvngeHnH<-*
                   +iT+g       +i v+++H+H   
    KIAA1552   653 AITQG------HRIMVMRSHCH    668  

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