# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh12289.fasta.huge -Q ../query/KIAA1546.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1546, 684 aa vs ./tmplib.25089 library 1986821 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 10.5044+/-0.00622; mu= -11.9700+/- 0.414 mean_var=371.5102+/-89.625, 0's: 0 Z-trim: 5 B-trim: 0 in 0/40 Lambda= 0.066541 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1676 ( 735 res) fh07095 ( 735) 741 85.4 2e-17 KIAA0401 ( 344 res) hg01095 ( 344) 295 42.3 9.1e-05 >>KIAA1676 ( 735 res) fh07095 (735 aa) initn: 1171 init1: 662 opt: 741 Z-score: 404.7 bits: 85.4 E(): 2e-17 Smith-Waterman score: 1050; 35.131% identity (57.289% similar) in 686 aa overlap (1-684:208-735) 10 20 30 KIAA15 EEKLESHLQNLSTLMAPTYKKLAPDAYNNQ :..::..::.:.: .:: ::. :: ::.:: KIAA16 CSWSMYFNGCKFGRSPSPRRFRIDPSSPLHEKNLEDNLQSLATRLAPIYKQYAPVAYQNQ 180 190 200 210 220 230 40 50 60 70 80 90 KIAA15 IEYEHRAPECRLGLKEGRPFSGVTACLDFCAHAHRDLHNMQNGSTLVCTLTREDNREFGG .:::. : ::::: :::::::::::::::::: :::.:::.::::.:::::::::: .: KIAA16 VEYENVARECRLGSKEGRPFSGVTACLDFCAHPHRDIHNMNNGSTVVCTLTREDNRSLGV 240 250 260 270 280 290 100 110 120 130 140 KIAA15 KPEDEQLHVLPLYKVSDVDEFGSVEAQEEKKRSGAIQVLSSFRRKVRMLAEPV-KTCRQR :.:::::::::::.::.::::: :..: : .::::.::. :.: ...:: .. ..: KIAA16 IPQDEQLHVLPLYKLSDTDEFGSKEGMEAKIKSGAIEVLAPRRKKRTCFTQPVPRSGKKR 300 310 320 330 340 350 150 160 170 180 190 200 KIAA15 KLEAKKAAAEKLSSLENSSNKNEKEKSAPSRTKQTENASQAKQLAELLRLSGPVMQQSQQ .. :.:. ..:.. :.:. . : : :. ..: : : .... KIAA16 AAMMTEVLAHKIRAVEKKPIPRIKRKNNSTTT----NNSKPSSLPTL----G---SNTET 360 370 380 390 400 210 220 230 240 250 260 KIAA15 PQPLQKQPPQPQQQQRPQQQQPHHPQTESVNSYSASGSTNPYMRRPNPVSPYPNSSHTSD :: :. .:. . .......:: :. :.::. . : KIAA16 VQPEVKSETEPHFILK---------SSDNTKTYSLMPSA------PHPVKEASPGFSWSP 410 420 430 440 450 270 280 290 300 310 320 KIAA15 IYGSTSPMNFYSTSSQAAGSYLNSSNPMNPYPGLLNQNTQYPSYQCNGNLSVDNCSPYLG .:..: . . .. . : ::.: . .:: . .: .. .: . KIAA16 KTASATPAPLKNDATASCGFSERSSTP----------HCTMPSGRLSGANAAAADGPGI- 460 470 480 490 500 330 340 350 360 370 380 KIAA15 SYSPQSQPMDLYRYPSQDPLSKLSLPPIHTLYQPRFGNSQSFTSKYLGYGNQNMQGDGFS : . :. : ..:: :.. .: : .. .: KIAA16 SQLGEVAPLPTLSAPVMEPL-------INS--EPSTGVTEPLT----------------- 510 520 530 390 400 410 420 430 440 KIAA15 SCTIRPNVHHVGKLPPYPTHEMDGHFMGATSRLPPNLSNPNMDYKNGEHHSPSHIIHNYS : :.:. . :. :: : .:.. :. . :.:: . . KIAA16 --------------PHQPNHQPS--FL--TS--PQDLASSPME--EDEQHSEA------D 540 550 560 450 460 470 480 490 500 KIAA15 AAPGMFNSSLHALHLQNKENDMLSHTANGLSKMLPALNHDRTACVQGGLHKLSDANGQEK :. . : .: :: :: .:: KIAA16 EPPS--DEPLS--------DDPLS----------PA---------------------EEK 570 580 510 520 530 540 550 560 KIAA15 QPLALVQGVASGAEDNDEVWSDSEQSFLDPDIGGVAVAPTHGSILIECAKRELHATTPLK : :: :::::. ::: .:::::.::.:::.:::::.::::::::.. KIAA16 LPHI------------DEYWSDSEHIFLDANIGGVAIAPAHGSVLIECARRELHATTPVE 590 600 610 620 630 570 580 590 600 610 620 KIAA15 NPNRNHPTRISLVFYQHKSMNEPKHGLALWEAKM-AEKAREKEEECEKYGPDYVPQKSHG .::::::::.::::::::..:.:.::. : . :. :..:..:. .:. KIAA16 HPNRNHPTRLSLVFYQHKNLNKPQHGFELNKIKFEAKEAKNKK------------MKASE 640 650 660 670 680 630 640 650 660 670 680 KIAA15 KKVKREPAEPHETSEPTYLRFIKSLAERTMSVTTDSTVTTSPYAFTRVTGPYNRYI .: . :...:: . : : : ......: :..::.::::.:.:.::::... KIAA16 QKDQAANEGPEQSSEVNELNQIPS--HKALTLTHDNVVTVSPYALTHVAGPYNHWV 690 700 710 720 730 >>KIAA0401 ( 344 res) hg01095 (344 aa) initn: 281 init1: 149 opt: 295 Z-score: 177.4 bits: 42.3 E(): 9.1e-05 Smith-Waterman score: 295; 44.961% identity (64.341% similar) in 129 aa overlap (568-684:221-344) 540 550 560 570 580 590 KIAA15 DPDIGGVAVAPTHGSILIECAKRELHATTPLKNPNRNHPTRI------SLVFYQHKSMNE : :: ... :: .:::::::..:. KIAA04 AGPSLTEKPWALGAGDFNSALKGSPGFQDKLWNPMKGEEGRIPAAGASQLVFYQHKNLNQ 200 210 220 230 240 250 600 610 620 630 640 KIAA15 PKHGLALWEAKM---AEKAREKEEECEKYGPDYVPQKSHGKKVK---REPAEPHETSEPT :.:::::::::: ::.:: ..:: . : : .::: : :::.. . KIAA04 PNHGLALWEAKMKQLAERARARQEEAARLGLGQQEAKLYGKKRKWGGTVVAEPQQKEKKG 260 270 280 290 300 310 650 660 670 680 KIAA15 YLRFIKSLAERTMSVTTDSTVTTSPYAFTRVTGPYNRYI . ..:: : :::.::.: ::.:.:::::.:.: KIAA04 VVPTRQALA-----VPTDSAVTVSSYAYTKVTGPYSRWI 320 330 340 684 residues in 1 query sequences 1986821 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:07:32 2008 done: Thu Dec 18 15:07:33 2008 Total Scan time: 0.540 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]