hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-05451456/chunk_1/iprscan-20080502-05451456.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1540 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00001.12.fs 7 transmembrane receptor (rhodopsin family) 285.4 7.9e-95 1 PF00001.12.ls 7 transmembrane receptor (rhodopsin family) 287.2 2.8e-83 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00001.12.fs 1/1 89 346 .. 1 272 [] 285.4 7.9e-95 PF00001.12.ls 1/1 89 346 .. 1 272 [] 287.2 2.8e-83 Alignments of top-scoring domains: PF00001.12.fs: domain 1 of 1, from 89 to 346: score 285.4, E = 7.9e-95 *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg GN+LV+ vi+++++++++t++fi+NLAvAD++++l+++p++l+ +v+ KIAA1540 89 GNVLVCHVIFKNQRMHSATSLFIVNLAVADIMITLLNTPFTLVRFVN 135 gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr ++W fG+ +C+++ + +++++ +S l+LtaI++DR+++I+hPl+ r + KIAA1540 136 -STWIFGKGMCHVSRFAQYCSLHVSALTLTAIAVDRHQVIMHPLKPRISI 184 tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp t ++++ i+++W++a+ +slP+++ +++ t+ ++++ ++ Cl+dfp KIAA1540 185 T---KGVIYIAVIWTMATFFSLPHAICQKLFTFKYSED-IVRSLCLPDFP 230 evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas e++ +++ ++ l +++ ++lPll+i+v+Y r++++l+ +++ g+ KIAA1540 231 EPA----DLFWKYLDLATFILLYILPLLIISVAYARVAKKLWLCNMIGDV 276 .....kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiims ++++ + ++k++k+ k+l +vvv+F+lCW+P++ +ll + + + KIAA1540 277 tteqyFALRRKKKKTIKMLMLVVVLFALCWFPLNCYVLLLSSKvIR---- 322 ssCelervlptallvtlwLayvNsclNPiIY<-* + ++++++++w+a+++ c+NP+IY KIAA1540 323 -------TNNALYFAFHWFAMSSTCYNPFIY 346 PF00001.12.ls: domain 1 of 1, from 89 to 346: score 287.2, E = 2.8e-83 *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg GN+LV+ vi+++++++++t++fi+NLAvAD++++l+++p++l+ +v+ KIAA1540 89 GNVLVCHVIFKNQRMHSATSLFIVNLAVADIMITLLNTPFTLVRFVN 135 gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr ++W fG+ +C+++ + +++++ +S l+LtaI++DR+++I+hPl+ r + KIAA1540 136 -STWIFGKGMCHVSRFAQYCSLHVSALTLTAIAVDRHQVIMHPLKPRISI 184 tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp t ++++ i+++W++a+ +slP+++ +++ t+ ++++ ++ Cl+dfp KIAA1540 185 T---KGVIYIAVIWTMATFFSLPHAICQKLFTFKYSED-IVRSLCLPDFP 230 evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas e++ +++ ++ l +++ ++lPll+i+v+Y r++++l+ +++ g+ KIAA1540 231 EPA----DLFWKYLDLATFILLYILPLLIISVAYARVAKKLWLCNMIGDV 276 .....kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiims ++++ + ++k++k+ k+l +vvv+F+lCW+P++ +ll + + + KIAA1540 277 tteqyFALRRKKKKTIKMLMLVVVLFALCWFPLNCYVLLLSSKvIR---- 322 ssCelervlptallvtlwLayvNsclNPiIY<-* + ++++++++w+a+++ c+NP+IY KIAA1540 323 -------TNNALYFAFHWFAMSSTCYNPFIY 346 //