# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fg02356.fasta.huge -Q ../query/KIAA1539.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1539, 543 aa
 vs ./tmplib.25089 library

1986962 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 10.1339+/-0.0102; mu= -7.8679+/- 0.690
 mean_var=465.8182+/-112.732, 0's: 0 Z-trim: 4  B-trim: 0 in 0/40
 Lambda= 0.059425

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1370  ( 1107 res)   fj03240                    (1107)  836 86.3 1.3e-17


>>KIAA1370  ( 1107 res)   fj03240                         (1107 aa)
 initn: 847 init1: 570 opt: 836  Z-score: 408.1  bits: 86.3 E(): 1.3e-17
Smith-Waterman score: 836;  54.222% identity (76.889% similar) in 225 aa overlap (325-541:881-1105)

          300       310       320       330       340       350    
KIAA15 LPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLL
                                     :  ...  : .   :  :    : .: .::
KIAA13 PVPQRKTQSGCFDLDSSLLHLKSFSSRSPRPCLNIEDDPDIHEKPFLSSSAPPITSLSLL
              860       870       880       890       900       910

          360       370       380       390       400       410    
KIAA15 GNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQNAPAPFLGIV
       ::::::.:  :: : : ..:::::.::::..:: :.:::: :.:..::..:::.:..:..
KIAA13 GNFEESVLNYRFDPLGIVDGFTAEVGASGAFCPTHLTLPVEVSFYSVSDDNAPSPYMGVI
              920       930       940       950       960       970

          420       430       440       450       460       470    
KIAA15 DLNPLGRKGYSVPKVGTVQVTLFNPNQTVVKMFLVTFDFSDMPAAHMTFLRHRLFLVPVG
        :. ::..:: ::  ::.::::::::.::::::.: .:. :::: :.::::.: : ::: 
KIAA13 TLESLGKRGYRVPPSGTIQVTLFNPNKTVVKMFVVIYDLRDMPANHQTFLRQRTFSVPVK
              980       990      1000      1010      1020      1030

               480          490       500       510       520      
KIAA15 EE-----GNANPTH---RLLCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLELDTGLPYE
       .:     .. :  :   ::: ::.::::.::.::.. :: :.::::::.:.:.:.:  ::
KIAA13 QEVKRSVNKENIRHTEERLLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGAAYE
             1040      1050      1060      1070      1080      1090

        530       540   
KIAA15 LQAVTEAPHNPRYSPLP
       :.. ::.: ::..::  
KIAA13 LKSYTESPTNPQFSPRC
             1100       




543 residues in 1 query   sequences
1986962 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:07:17 2008 done: Thu Dec 18 15:07:17 2008
 Total Scan time:  0.480 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]