hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05253116/chunk_1/iprscan-20080502-05253116.nocrc
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Query sequence: KIAA1528
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02825.10.ls WWE domain                                     115.6    1.3e-31   2
PF02825.10.fs WWE domain                                     111.9    1.8e-31   2
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           22.9    1.1e-07   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           24.8    0.00029   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02825.10.fs   1/2     127   215 ..     1    89 []    54.5  5.3e-15
PF02825.10.ls   1/2     127   215 ..     1    89 []    56.4  8.8e-14
PF02825.10.fs   2/2     216   292 ..     1    89 []    57.4  7.8e-16
PF02825.10.ls   2/2     216   292 ..     1    89 []    59.3  1.2e-14
PF00097.15.fs   1/1     530   590 ..     1    50 []    22.9  1.1e-07
PF00097.15.ls   1/1     530   590 ..     1    50 []    24.8  0.00029

Alignments of top-scoring domains:
PF02825.10.fs: domain 1 of 2, from 127 to 215: score 54.5, E = 5.3e-15
                   *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk
                      +v+ ++++a   v+vWe+    d  g+W+pYs  v+  IE  +  +k
    KIAA1528   127    LVQVYTSPAA--VAVWEWQ---DGLGTWHPYSATVCSFIEQQFVQQK 168  

                   k.........GsVtleqvCsicGrpYtidfntmtQlreetgslsttReVr
                    ++ + ++   s+ l+q  ++ + pY+id+ + tQ+r++tg   t+R Vr
    KIAA1528   169 GqrfglgslaHSIPLGQA-DPSLAPYIIDLPSWTQFRQDTG---TMRAVR 214  

                   R<-*
                   R   
    KIAA1528   215 R    215  

PF02825.10.ls: domain 1 of 2, from 127 to 215: score 56.4, E = 8.8e-14
                   *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk
                      +v+ ++++a   v+vWe+    d  g+W+pYs  v+  IE  +  +k
    KIAA1528   127    LVQVYTSPAA--VAVWEWQ---DGLGTWHPYSATVCSFIEQQFVQQK 168  

                   k.........GsVtleqvCsicGrpYtidfntmtQlreetgslsttReVr
                    ++ + ++   s+ l+q  ++ + pY+id+ + tQ+r++tg   t+R Vr
    KIAA1528   169 GqrfglgslaHSIPLGQA-DPSLAPYIIDLPSWTQFRQDTG---TMRAVR 214  

                   R<-*
                   R   
    KIAA1528   215 R    215  

PF02825.10.fs: domain 2 of 2, from 216 to 292: score 57.4, E = 7.8e-16
                   *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk
                       ++p  +++g  +vvWe+    +d g+W++Y+ +v+ ++E   a++ 
    KIAA1528   216    HLFPQHSAPG-RGVVWEWL---SDDGSWTAYEASVCDYLEQQVARGN 258  

                   kGsVtleqvCsicGrpYtidfntmtQlreetgslsttReVrR<-*
                   +    ++ +  + G  Yt++  t tQ+++ +    + R+VrR   
    KIAA1528   259 Q---LVD-L-APLGYNYTVNYTTHTQTNKTSS---FCRSVRR    292  

PF02825.10.ls: domain 2 of 2, from 216 to 292: score 59.3, E = 1.2e-14
                   *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk
                       ++p  +++g  +vvWe+    +d g+W++Y+ +v+ ++E   a++ 
    KIAA1528   216    HLFPQHSAPG-RGVVWEWL---SDDGSWTAYEASVCDYLEQQVARGN 258  

                   kGsVtleqvCsicGrpYtidfntmtQlreetgslsttReVrR<-*
                   +    ++ +  + G  Yt++  t tQ+++ +    + R+VrR   
    KIAA1528   259 Q---LVD-L-APLGYNYTVNYTTHTQTNKTSS---FCRSVRR    292  

PF00097.15.fs: domain 1 of 1, from 530 to 590: score 22.9, E = 1.1e-07
                   *->CrICleelkepsnd.............fplilpCgHsGslkyfCrsC
                      C IC+e l+ +s +++ ++++  ++  +  ++ C H+     f+  C
    KIAA1528   530    CIICMEKLSAASGYsdvtdskaigslaVGHLTKCSHA-----FHLLC 571  

                   lerwlss...sgnttCplC<-*
                   l+ ++ +++++g+ +Cp C   
    KIAA1528   572 LLAMYCNgnkDGSLQCPSC    590  

PF00097.15.ls: domain 1 of 1, from 530 to 590: score 24.8, E = 0.00029
                   *->CrICleelkepsnd.............fplilpCgHsGslkyfCrsC
                      C IC+e l+ +s +++ ++++  ++  +  ++ C H+     f+  C
    KIAA1528   530    CIICMEKLSAASGYsdvtdskaigslaVGHLTKCSHA-----FHLLC 571  

                   lerwlss...sgnttCplC<-*
                   l+ ++ +++++g+ +Cp C   
    KIAA1528   572 LLAMYCNgnkDGSLQCPSC    590  

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